These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [CAGAATCGGCCGAGGTTNACGGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACTGCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAGTTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAGGATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTGGGAGCTTCCGAAAGCTCTCGATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACCTCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGGCACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTTGTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACGATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAGCAACACTCATCCTTTCTAAAA] [+] EMBL AL697141 [CAGAATCGGCCGAGGTTNACGGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACTGCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAGTTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAGGATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTGGGAGCTTCCGAAAGCTCTCGATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACCTCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGGCACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTTGTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACGATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAGCAACACTCATCCTTTCTAAAA] consensusID : consensus_2303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCACTCGAAGGCAAAAACAAATCAATCTCGCAGCCAAGAAGCGTGAAGGAGACATGTTTGTTTAGTTTTTTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTCATCCTTTCTAAAATTCTATTAAAACTGTGTTTCATCAACATCGATCACAACACTTTAGAATGGGTCGATGGCAAAAAAAACGAGTTCTTGCAAGCGCAGTTATAAGTGATTGTTTTTCCTCGATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGGAGCTAAATTCATTTCAAACAGCATAAGATTCAGTATTACGTTTAAGCAGGGTTTTGGAATGGGTCCAGAATAAAATG] [+] EMBL BX612815 [TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCACTCGAAGGCAAAAACAAATCAATCTCGCAGCCAAGAAGCGTGAAGGAGACATGTTTGTTTAGTTTTTTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATGACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTCATCCTTTCTAAAATTCTATTAAAACTGTGTTTCATCAACATCGATCACAACACTTTAGAATGGGTCGATGGCAAAAAAAACGAGTTCTTGCAAGCGCAGTTATAAGTGATTGTTTTTCCTCGATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGGAGCTAAATTCATTTCAAACAGCATAAGATTCAGTATTACGTTTAAGCAGGGTTTTGGAATGGGTCCAGAATAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2303#0 CAGAATCGGCCGAGGTTNAC--GGTGGAAGAGTACGGGCGAAGGTGTCCCGGAGTCTACT 58 consensus_2303#1 --------TGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGCA-CTCGAAGGCAAAA 51 * ***** * * ** ** **** * ** ** * * consensus_2303#0 GCCCTGGAGTACGGTGGTAACGGTGCCACCCTGAAGGTGCTGAACGAACGATTTAGAGAG 118 consensus_2303#1 ACAAATCAATCTCGCAGCCAAGAAG----CGTGAAGGAGACATGT---TTGTTTAGTTTT 104 * * * * * * * * * ****** * ***** consensus_2303#0 TTTCTTCGGTCGAAGCGCACTACGCTGCTGGAGCTTGACGAGATGGAGATCGATCTGAAG 178 consensus_2303#1 TTTTTTGTTTTGGTTTTTGGTTTGCAGTCGAATTTTTGTTTAGTCACGGTCCGCCAAATG 164 *** ** * * * ** * * * ** * * ** * * * consensus_2303#0 GATCCACGGGAAGCGGCGTCCACGAGGATGTGGGCGAGGTGGTGGCCGATGGTGCTGTTG 238 consensus_2303#1 ACGTAGCATTTGGCAAATGTTAAATGACAAAGTGAGAAACGGTTTCGTACGGACGGTGTA 224 * ** * * * * ** *** * * ** * consensus_2303#0 GGAGCTTCCGAAAGCTCTCG-ATCGATTGAACCATCCCCTGGCGGATCTTCTTCCACACC 297 consensus_2303#1 TCTATATGCGAGCGCGCTTGTACAAAAAAAAGCAACCACTC----ATCCTTTCTAAAATT 280 * *** ** ** * * * ** ** ** ** *** * * * * consensus_2303#0 TCAATGTGATAAGCTGCTACTGCTGCAAGGTTATCTTATCTCCAAAGCTTGGTATAAGGG 357 consensus_2303#1 CTATTA----AAACTG----TGTTTCATCAACATCG-ATCACAACACTTTAGAATGGG-- 329 * * ** *** ** * ** *** *** * * * ** * ** * consensus_2303#0 CACTCGAAGGCAAAAACAAATCAAATCTCGCAGCCAAGAAGCGTGAAGGAGACCATGTTT 417 consensus_2303#1 ---TCGATGGCAAAAA-AAACGAGTTCTTGCAAGC--GCAGT-TATAAGTGATTGTTTTT 382 **** ******** *** * *** *** * * ** * * * ** * *** consensus_2303#0 GTTCTAGGTATATCTCACACCTACACTGTTATATGGGGTTATCANCATGGGTTTGGCACG 477 consensus_2303#1 CCTC-GATTCTGGGGTGTATGTGTGCGATTCTGGTTTTTTGTAACGGTGACGTCAAAGGG 441 ** * * * * * ** * ** * * ** * * consensus_2303#0 ATCGAATTATCTGTTTTAAGTCACGGTCCGGCAAATGACGTAGCATTTGGCAAATGTTAA 537 consensus_2303#1 AGCTAA--ATTCATTTCAAA--------CAGCATAAGATTCAGTATT------ACGTTTA 485 * * ** ** *** ** * *** * ** ** *** * *** * consensus_2303#0 ATGACAAAGTGACGAAACGGTTTCGTACGGACGGTGTATCTATATGCGAGCGCGCTTGTA 597 consensus_2303#1 A--GCAGGGTTTTGGAATGGGTCCAGA-ATAAAATG------------------------ 518 * ** ** * ** ** * * * * ** consensus_2303#0 CAAAAAAAGCAACACTCATCCTTTCTAAAA 627 consensus_2303#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||