These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GGCAGAATCGCCACGAGGTTGATCGTCGGAATCTGTGGCTCGNCATGTGCACTATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCGTACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACGTTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACCGGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAAGGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNCACGAGAGCGA] [+] EMBL BX467285 [GGCAGAATCGCCACGAGGTTGATCGTCGGAATCTGTGGCTCGNCATGTGCACTATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCGTACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACGTTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACCGGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAAGGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNCACGAGAGCGA] consensusID : consensus_231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGACAGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAAAGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGGATGTGCACTATCTAGTCAAGGGACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCGTACAACCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGTCGGCGGGCAAACGTTGGGCTCGGTTCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAA] [+] EMBL BM628275 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGACAGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAAAGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGGATGTGCACTATCTAGTCAAGGGACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCATGAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGATCGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCGTACAACCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTACCCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGAGGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGTCGGCGGGCAAACGTTGGGCTCGGTTCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTGATAGTGGCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_231#0 ------------------------------------------------------------ consensus_231#1 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTGCGATGGCCAATAAGAGCGACAATCTGAC 60 consensus_231#0 ------------------------------------------------------------ consensus_231#1 AGCGGTGCTGTACGGCATTGAGGATCTGCGCCTGGAGCAGCGTCCCATTCCGGTGCCGAA 120 consensus_231#0 ---GGCAGAATCGCCAC--GAGGTTGA--TCGTCGGAATCTGTGGCTCGNCATGTGCACT 53 consensus_231#1 AGATGACGAGGTGCTGCTGGAGATGGACGTCGTCGGAATCTGTGGCTCGG-ATGTGCACT 179 * ** ** * *** * ** ******************** ********* consensus_231#0 ATCTAGTCAAGGGGACAGATCGGTGATTTTATCGTGAAAAAACCCATGGTCATAGGCCAT 113 consensus_231#1 ATCTAGTCAAGGG-ACGGATCGGCGATTTTATCGTGAAAAAACCCATGGTCATAGGCCAT 238 ************* ** ****** ************************************ consensus_231#0 GAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTGAAGCATCTGAATGTTGGTGAT 173 consensus_231#1 GAAGCGTCCGGTGTGGTGTCCAAGGTGGGCTCGAAGGTAAAGCATCTGCAAGTCGGTGAT 298 ************************************** ********* * ** ****** consensus_231#0 CGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGCAAGGGCGGTTCG 233 consensus_231#1 CGCGTTGCGATCGAACCTGGCTACGGTTGTCGCACGTGCGAATACTGTAAGGGCGGTTCG 358 *********************************************** ************ consensus_231#0 TACAACNCTCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTAC 293 consensus_231#1 TACAACC-TCTGTGCGGAGATGATCTTCTGTGCCACCCCGCCGTACGATGGCAACCTTAC 417 ****** **************************************************** consensus_231#0 CCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGA 353 consensus_231#1 CCGGTACTTTGCCCATCCGGCCGACTTTTGCTACAAACTGCCCGACCACGTGACCATGGA 477 ************************************************************ consensus_231#0 GGAGGGTGCCCTGCTGGAGCCGCTTNCGGTCGGTGTGCATGCGTGTACGGCGGGCAAACG 413 consensus_231#1 GGAGGGTGCCCTGCTGGAGCCGCTTTCGGTCGGTGTGCATGCGTGT-CGGCGGGCAAACG 536 ************************* ******************** ************* consensus_231#0 TTGGGCTCGGTATCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTG 473 consensus_231#1 TTGGGCTCGGT-TCGCAGGTGCTAATTCTTGGGGCGGGACCGATCGGTCTGGTGACGTTG 595 *********** ************************************************ consensus_231#0 ATAGTGGCCAAAGCCGATGGGTGCGGGCAAAGTGCTCGTTAACCGATCTGCTCCAGAACC 533 consensus_231#1 ATAGTGGCCAA------------------------------------------------- 606 *********** consensus_231#0 GGCTGGACGTGGCGAAACGGAGCTGGGACGNCATGNNTGAAAACGCTAGCCATACCCGAA 593 consensus_231#1 ------------------------------------------------------------ consensus_231#0 GGACCGCNGACGGAGGCTGAGACTGGTGAACGGATCATACACACGGAGGCGACNATGGNC 653 consensus_231#1 ------------------------------------------------------------ consensus_231#0 ACGAGAGCGA 663 consensus_231#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||