These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTCGTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACGTGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGGGACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACACAGTGCTTTAATAAAATATAATTTTATTGCCAATT] [+] EMBL BM598082 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTCGTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACGTGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGGGACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACACAGTGCTTTAATAAAATATAATTTTATTGCCAATT] consensusID : consensus_2321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AACTGGTGAGCTCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCGACGACAACGCCAGCGACGTGGAGTGGATGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGGGACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCACAGTGCTTTAATAAAATATAATTTT] [+] EMBL BX608861 [AACTGGTGAGCTCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCGACGACAACGCCAGCGACGTGGAGTGGATGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCACCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCCAGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGGGACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGACGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATGGGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGCAGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATGGTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCACAGTGCTTTAATAAAATATAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2321#0 CCGCGGACGCGTGGGCGGACGCGTGGGTCGCCTGGAGCTCGCACGCGGGCCACGATTTTC 60 consensus_2321#1 -------------------------------------------------AACTGGTGAGC 11 * * * consensus_2321#0 GTAGTTTTTTGTGAATAAAACAATTAAATCGCTATGAAAGCCATAATACAGCGTGTAACG 120 consensus_2321#1 TCGATCGGTCGTGGCTTGTGCGTGCTGGTCGGCATCTCTTCCG-ACGACAACGC-CAGCG 69 * * *** * * *** ** ** * *** ** * ** consensus_2321#0 TGTGCGAAGGTAACGGGGCACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCA 180 consensus_2321#1 -ACGTGGAGTGGATGG--CACGGAAGTTACTTAATTTGCGGCTGTTTGAGAACCCTTCCA 126 * * ** * ** ****************************************** consensus_2321#0 CCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCC 240 consensus_2321#1 CCGGCAAACGATGGTCGGAATCGGTGGTGGATCTGCAGCTGGAGATGCTGTGCGTCAGCC 186 ************************************************************ consensus_2321#0 AGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGTCGAGCCATGCAGG 300 consensus_2321#1 AGTTCACGCTGTACCATCGGTTGAAGGGCAACCGTCCCGATTTCAGCCGAGCCATGCAGG 246 ********************************************** ************* consensus_2321#0 GACCGGAGGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGA 360 consensus_2321#1 GACCGGAAGCGCAGCAGCTGTACGAATCGCTGCTGCAGAGGATGCGGAACGAGTACGCGA 306 ******* **************************************************** consensus_2321#0 CGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATG 420 consensus_2321#1 CGGAGCGCATACTGGATGGGCGGTTCGGGGCGATGATGCAGGTGCACGTGGTGAACGATG 366 ************************************************************ consensus_2321#0 GGCCGGTTACGCTGGAAATTGAATCTCCCGTACCGAGCGAATACGAGCGGCAAAAGCTGC 480 consensus_2321#1 GGCCGGTTACGCTGGAAATTGAATCTCCGGTACCGAGCGAATACGAGCGGCAAAAGCTGC 426 **************************** ******************************* consensus_2321#0 AGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGCCGGTGGGGACGAAGGGCACGGATG 540 consensus_2321#1 AGCGAGCGTCCGAACGGAATGCGAAATCGGACAAGTCGGATGGGAGGAAGGTCACGGATG 486 *********************************** *** **** ***** ******** consensus_2321#0 GTGGTGCTGAGGGTACGAGTGGAAAGGTTAGCAAGGAATCGGAAAGCAGTTCATGAACAC 600 consensus_2321#1 GTGGTGCTGAGGGTACGAGTGGAAAGGGTTGCAAGGAATCGGAAAGCAGTTCATGAGCAC 546 *************************** * ************************** *** consensus_2321#0 AGTGCTTTAATAAAATATAATTTTATTGCCAATT 634 consensus_2321#1 AGTGCTTTAATAAAATATAATTTT---------- 570 ************************ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||