cluster # 233

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Anopheles gambiae
cluster # 233 cluster # 233 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_233#0 length = 636 sequences # 1

consensus_233#1 length = 584 sequences # 1

consensusID : consensus_233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTGCGCCCGATGGCCGAGCAGCCGAGCGTGCACATTCTGCACGATCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC]

[+] EMBL BM576283             [CCGCGGACGCGTGGGCGGACGCGTGGGCTGCGCCCGATGGCCGAGCAGCCGAGCGTGCACATTCTGCACGATCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTACCTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAGAATGTCAAGTTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC]




>consensus_233#0
CCGCGGACGCGTGGGCGGACGCGTGGGCTGCGCCCGATGGCCGAGCAGCCGAGCGTGCAC
ATTCTGCACGATCGCGCCCAAACCACCAAGTCGTTCGAGCAGTCGTTCGGTCAGTCGCTG
ACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGACTACGCCTAC
CTGATGAAGCACATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTATCCGTTCGCCTCG
GAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGCACCAGCGTGAAG
AATGTCAAGTTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGGACTTCCAGACCGCC
GACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACAACGAGTACAACTAC
GCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGCAGTTCATGCGCAAC
GCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCGGAATCGTGTTCGAG
GGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCGACAGCCCAGTCGAC
GAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC

consensusID : consensus_233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACGCACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATTAGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGATAGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTATTTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTCATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACCTTTCATACAAACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGAGGAACGTGTTTTTTACGTCTAATGTTTTTACAGGGTTTTCCAGGTGTTCTCTTAGTTGTCGGACACTTCCTTGACTCTTTCTTATTGGAAGTGAACTTCATAGGTTGGAAATTGGTTTCTATGGCACGGTTTATGACAGGTTTCTTGGCAAATTCCTATTGGATTTGTCCAACA]

[+] EMBL BM643932             [CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACGCACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATTAGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGATAGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTATTTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTCATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACCTTTCATACAAACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGAGGAACGTGTTTTTTACGTCTAATGTTTTTACAGGGTTTTCCAGGTGTTCTCTTAGTTGTCGGACACTTCCTTGACTCTTTCTTATTGGAAGTGAACTTCATAGGTTGGAAATTGGTTTCTATGGCACGGTTTATGACAGGTTTCTTGGCAAATTCCTATTGGATTTGTCCAACA]




>consensus_233#1
CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACG
CACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATT
AGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGAT
AGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTAT
TTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTC
ATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACCTTTCATACAAACT
CCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGAGGAACGTGTT
TTTTACGTCTAATGTTTTTACAGGGTTTTCCAGGTGTTCTCTTAGTTGTCGGACACTTCC
TTGACTCTTTCTTATTGGAAGTGAACTTCATAGGTTGGAAATTGGTTTCTATGGCACGGT
TTATGACAGGTTTCTTGGCAAATTCCTATTGGATTTGTCCAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_233#0      CCGCGGACGCGTGGGCGGA-CGCGTGGGCTGCGC--CCGAT--GGCCGAGCAGCCGAGCG 55
consensus_233#1      CCGTACAGGTATTAGTATAGCAGGTGCGCTTCGTTTCCGATCGGGCCGCGCCGCCGCACG 60
                     ***   * *  *  *   * *  *** *** **   *****  ***** ** ****  **

consensus_233#0      TGC-ACATTCTGCACGATCGCGCC-CAAACCACCA--AGTCGTTCGAGCAGTCGTTCGGT 111
consensus_233#1      CACGACGCCACACGCTGCCGTGCCGCGAGTTAGCACCGCTCGGACGCGCACACCTTTATT 120
                       * **      * *   ** *** * *   * **    ***  ** ***  * **   *

consensus_233#0      CAGTCGCTGACCGGCGTTGCTCTGCGCTTCCAGGCCAAGTACGACAAGGACTTCATCGAC 171
consensus_233#1      AGCAAGCATAGCGAATTTATGAACCGCAATCACACACACACTGTTTAGCATTTAGACGAT 180
                          **  * **   **      ***   **  *  *    *   ** * **   *** 

consensus_233#0      TACGCCTACCTGATGAAGCA---CATTGAGCAGCACGACTACTGGTCTGCGCTGGTCTAT 228
consensus_233#1      AGATTAGAAATGATAAAACAATGCAAAGGAAGATGCGGTAAGGAAGAAGCGATGTTCTAT 240
                            *  **** ** **   **  *       **   *       *** ** *****

consensus_233#0      CCGTTCGCCTCGGAGACCTACCACTACCATCAGTTTAACCTGTACTACGATGCTCAGCGC 288
consensus_233#1      TTTGGCATTGTCTTGAGCAATTCGGTTCATTTGCATGAGCGTCATCATACTAGTTCTTTC 300
                          *        ** * *       ***  *  * * *   *  *   *  *     *

consensus_233#0      ACCAGCGTGAAGAATGTCAAG--TTTGTGCTGCAGCACAAGCAGGCCGACTACGACCAGG 346
consensus_233#1      ATTTAGATCAACGGTTTTCAGACTTTTTACCTTTTTTCACTTTTACC---TTTCATACAA 357
                     *      * **   * *  **  *** * *       **      **   *   *     

consensus_233#0      ACTTCCAGACCGCCGACGTGAAACACCCGAAGAGTCGCCACGGATACTCTGGATTCTACA 406
consensus_233#1      ACTCCTGGATTGTTAGCTTGCTTCTATCTGTCAAACGCCCTGAAGATTTGGGA----GGA 413
                     *** *  **  *    * **   *   *    *  ****  * * * *  ***      *

consensus_233#0      ACGAGTACAACTACGCCCAGCCCTTCGTCTACTACGCCGGAAGCCAGCGCCGACAGGAGC 466
consensus_233#1      ACGTGTTTT-TTACGTCTAATGTTT------TTACAGGGTTTTCCAGGTGTTCTCTTAGT 466
                     *** **     **** * *    **       ***   *    ****          ** 

consensus_233#0      AGTTCATGCGCAACGCTGGTGCCGGTATTCGCAACAGCGACGTCAATGTCTACGATTTCG 526
consensus_233#1      TGT-CGGACACTTCCTTGACTCT----TTCTTATTGG--AAGTGAACTTC-ATAGGTTGG 518
                      ** *   * *  *  **   *     ***  *   *  * ** **  ** *    ** *

consensus_233#0      GAATCGTGTTCGAGGGCAAGCAGCAAAAGGCTGAGTTCGTGTTTACCACCGCCTATGCCG 586
consensus_233#1      AAATTGGTTTCTATGGCA--CGGTTTATGACAGGTTTCTTG---GCAAATTCCTATTGGA 573
                      *** *  *** * ****  * *   * * * *  *** **    * *   *****    

consensus_233#0      ACAGCCCAGTCGACGAGAAGGAGCGTCTGTTGATGTTCCTGTCCTTCAGC 636
consensus_233#1      TTTGTCCAACA--------------------------------------- 584
                        * ***