Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2331 cluster # 2331       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2331#0 length = 550 sequences # 1  
consensus_2331#1 length = 128 sequences # 1  

consensusID : consensus_2331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG]

[+] EMBL BM631615             [CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAAGGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTACGCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCACCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGACCCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAGGAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAATGCTTGGCAG]


>consensus_2331#0 CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAA GGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTAC GCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCA CCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGAC CCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAG GAGGTGAAACGCCGCACCGATGTTGTAGCGCGCCGCATCAAGGACCTGTTCGCAGCGATG AAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGGTC GTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTGCC CTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGCAA TGCTTGGCAG



consensusID : consensus_2331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence
                              [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG]

[+] EMBL AL697384             [GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACGCCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTTCCCAGCGG]


>consensus_2331#1 GCCCCGAGGTTTNACGGTGGCACGGTGCCGGTCAGCTTCCTCCTTCGAGGAGGTGAAACG CCGACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGATGAAAGATCTTT CCCAGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2331#0      CCGCACGATGTGCAGCTACGCATCGATTCGCATCTGAACGGTTCCGGCGGTGCCAGCGAA 60
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      GGCTCCCCGGAACGGGACCAGGAAGCAAGACAAGCAGCCGCCGCGGCAGCCGCTGCCTAC 120
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      GCCAAACGACCTGTCAGTATGTACGAAACGCGCCAGACGCCACGTGACGAAAGCCGACCA 180
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCGATCACGCAGAGCCTTTACTCGATGGCTCCGGCTGGTGGCAGCAGCGCCAGCATGGAC 240
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCGGGCAATGGCACGAATGTGAACGGTGGCACCGGTGCCGGTCAGCTTCCCTCCTTCGAG 300
consensus_2331#1      ---------GCCCCGAGGTTTNACGGTGGCAC-GGTGCCGGTCAGCTTCC-TCCTTCGAG 49
                               * * ***   *  ********** ***************** *********

consensus_2331#0      GAGGTGAAACGCCGCACCGATGTTGTAGCG--CGCCGCATCAAGGACCTGTTCGCAGCGA 358
consensus_2331#1      GAGGTGAAACGCCG-ACCGATGTAGTAGCTGCTGCCGCATCAAGGACCTGTTCGCAGCGA 108
                      ************** ******** *****    ***************************

consensus_2331#0      TGAAAGATCTTTCCCAGCGGGAAGCGTTCGTCCCGTCGGCGGAACGGATACGGCTGGCGG 418
consensus_2331#1      TGAAAGATCTTTCCCAGCGG---------------------------------------- 128
                      ********************                                        

consensus_2331#0      TCGTTGATTTGATGGCCCTGTTTCCCGCCTCGATCATTGCGAGCGAATCGCTCCGCGGTG 478
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      CCCTGCAGCAGCTCAACTTTCACGGTAACCTGATCCAGGCGGAGTGTGCCCGGCTGCAGC 538
consensus_2331#1      ------------------------------------------------------------
                                                                                  

consensus_2331#0      AATGCTTGGCAG 550
consensus_2331#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)