These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCTGCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTTTCCGTCGCGAAAGATATCGCCGGTCATC] [+] EMBL BM597750 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCTGCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTTTCCGTCGCGAAAGATATCGCCGGTCATC] consensusID : consensus_2335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGTGGGCG] [+] EMBL BM641018 [CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGAATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAACCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTTGGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGCATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTTAGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCCGTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTAACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACGATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAGGGCTTTATGATGTTTCACAGCGTGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2335#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGA 60 consensus_2335#1 ---CCGCTTTTTGGCGTTGCGGGAAACCGGTTTCCAAATTTTGATGTAGTGCGTGAGAGA 57 * * *** ** * ********************************* consensus_2335#0 ATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAA 120 consensus_2335#1 ATCAAATTTGAAAAGTGTTTGTGAAAACAAGAAAAAAAAGAGGAAAAGAAACAGTGCAAA 117 ************************************************************ consensus_2335#0 CCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTT 180 consensus_2335#1 CCTCCATTACCGCCACAATCTGCAATGGCTAAAAATCGCGAAATCATTCAGCTGCACGTT 177 ************************************************************ consensus_2335#0 GGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGC 240 consensus_2335#1 GGCCAGGCGGGCGTACAGATGGCCAGTGCCTGCTGGGAGCTGTACTGTCTCGAGCACGGC 237 ************************************************************ consensus_2335#0 ATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTT 300 consensus_2335#1 ATCTATCCGGACGGGCTGTTTTGCGACTGTTCGATCAACGAGGACTGCAGTGCGTTCTTT 297 ************************************************************ consensus_2335#0 AGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCC 360 consensus_2335#1 AGCTGTGACCGGTCGGGGCAGTGTGTGCCGCGCGTGCTGCTAGTCGATCTGGAACCGTCC 357 ************************************************************ consensus_2335#0 GTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTA 420 consensus_2335#1 GTGGTGGACGAGATACGGATCGGCACGTACCGGGATCTGTTTCATCCGAGCTCGCTGCTA 417 ************************************************************ consensus_2335#0 ACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACG 480 consensus_2335#1 ACCGGGTGTGAAGATGCGGCCAGTAACTTCGGCCGGGGCCACTATCGGCTCGGCCAGACG 477 ************************************************************ consensus_2335#0 ATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAG 540 consensus_2335#1 ATGATCGAACCGGCGATGGATCGGTTGCGCAAGCTGTGCGAACACTGCTCCTCGCTGCAG 537 ************************************************************ consensus_2335#0 GGCTTTATGATGTTTCACAGCGATGGGCGGCGGTACGGGGGCCGGCCTGGGGACGCTGCT 600 consensus_2335#1 GGCTTTATGATGTTTCACAGCG-TGGGCG------------------------------- 565 ********************** ****** consensus_2335#0 GCTCGAACGGCTCGGTGAGGACTTTTGGCAAGGCGTCGCGGCATGGAAGTTTGACATCTT 660 consensus_2335#1 ------------------------------------------------------------ consensus_2335#0 TCCGTCGCGAAAGATATCGCCGGTCATC 688 consensus_2335#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||