These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTACAGATCCACGACCACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTGAAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAGCAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCCCTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGACGTTCTGAAGAAGGCGGTCGTCG] [+] EMBL CNS092MT [TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTACAGATCCACGACCACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTGAAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAGCAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCCCTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGACGTTCTGAAGAAGGCGGTCGTCG] consensusID : consensus_2339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTACCGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCACCCCGGTGGCTGGTGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACAGTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGC] [+] EMBL BM597691 [CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTACCGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCACCCCGGTGGCTGGTGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACGGCGCACCGTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGTCGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACGGAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCCGAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTGGTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTGTTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAAGCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACACACACAGTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGTCCTCGCCCATATCTTGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2339#0 ------------------------------------------------------------ consensus_2339#1 CCGCCCACGCGTCCGCGCCCTCCCAGCACGGCAGGCACAAAAATCAACACCTGCCGGTAC 60 consensus_2339#0 ------------------------------------------------------------ consensus_2339#1 CGTGCAAATTCCGTGACGAAGCAGTGAGAAACCCATAAACATTTGCTATGTGAAAACGCA 120 consensus_2339#0 ------TGGCTGGATGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCACAGGCGCACC 54 consensus_2339#1 CCCCGGTGGCTGG-TGAAAAGCTGCATCAACGTCAAGCGAAAACCCCCCAC-GGCGCACC 178 ******* ************************************* ******** consensus_2339#0 GTCCCGCGGACAGTTGTGAGAGAAGGCG-----------------GGCAGAAGCAACAGT 97 consensus_2339#1 GTCCCGCGGACAGTTGTGAGAGAAGGCGAGCGCAGCCAAACGGCGGGCAGAAGCAACAGT 238 **************************** *************** consensus_2339#0 CGCGCATTTTCGGGTGTGCGTA-CAGATCCACGACCACGACGACGAAGGCGCACCGTACG 156 consensus_2339#1 CGCGCATTTTCGGGTGTGCGTAGCACGACCACGACGACGACGACGAAGGCGCACCGTACG 298 ********************** ** ******* ************************ consensus_2339#0 GAGCAGCCAGACAGGCAGGCAGGCAGGCAGGGTCGTCGCTTCTTTGTCGTCCGAACGTCC 216 consensus_2339#1 GAGCAGCCAGACAGGCAGGCAGGCAGGCAGGATCGTCGCTTCTTTGTCGTCCGAACGTCC 358 ******************************* **************************** consensus_2339#0 GAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTG 276 consensus_2339#1 GAGGAACCGAAGACCGAAGAATCGGTCGAGTCGTCGAGCAGCGACCGCAGCACAACCGTG 418 ************************************************************ consensus_2339#0 GTTGTTTATGTCGCGAGAGAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTG 336 consensus_2339#1 GTTGTTTATGTCGCGAGAAAGGTCACACCACGCCAGCCGTGTGTTGAAAAAGTGTGTTTG 478 ****************** ***************************************** consensus_2339#0 TTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAA 396 consensus_2339#1 TTGCCACTGTGTGTCGGTGGCACAGGAAAAGTGTCGCCGTCGGTCAGGGTAGAAGACGAA 538 ************************************************************ consensus_2339#0 GCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACA 456 consensus_2339#1 GCAACCAGCCCATTAGCCGAGCCAAACGCATCGCGGGAGGAGTAGAGAAAAACACGCACA 598 ************************************************************ consensus_2339#0 CACACACAGCGACGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGT 516 consensus_2339#1 CACACA--GTGAGGCATAGACAGAGCACACACAACCAGCCCGTCGTGGTACAGGGGAAGT 656 ****** * ** *********************************************** consensus_2339#0 CCTCGCCCATATCTTGATGCGAAGGAAAAAATCACTGCAACGATGGACGAAACATATCTG 576 consensus_2339#1 CCTCGCCCATATCTTGATGC---------------------------------------- 676 ******************** consensus_2339#0 AAGAATCTCGAAACGGCGGCCCACATCATCATGGCACCGCCGAATTCCATCACCAACCAG 636 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CAGCGGCAGGAGTTGGAGCACATTTTCACCACCTTCCGGAGGACGAAAACGCCGTACGCC 696 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 CTCTGCCAGGCGATACTGGAAAAATCGTCCGTCGATCTGGTGCTGTTCGAGGCGGCCGAC 756 consensus_2339#1 ------------------------------------------------------------ consensus_2339#0 GTTCTGAAGAAGGCGGTCGTCG 778 consensus_2339#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||