cluster # 2362

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Anopheles gambiae
cluster # 2362 cluster # 2362 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2362#0 length = 620 sequences # 1

consensus_2362#1 length = 566 sequences # 1

consensusID : consensus_2362#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [AGGCAAGAATTCGGCACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGGAGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCGTGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGATGAAATG]

[+] EMBL BX469818             [AGGCAAGAATTCGGCACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGGAGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCGTGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGATGAAATG]




>consensus_2362#0
AGGCAAGAATTCGGCACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAAT
TCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCA
GCAGATTCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGT
ACTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTC
GGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGA
CACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACA
TTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTG
CTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGAT
GATGAGTATCGCGGAGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACG
CCCCGAGGAGCTCGTGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGG
AGAGCGTCGCTGATGAAATG

consensusID : consensus_2362#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTGCGCGTCCCACATCATCGTTCTGTACGGGGGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGGAGGAAGGCGTACCGGATTGGGACGTGC]

[+] EMBL BM597486             [CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTGCGCGTCCCACATCATCGTTCTGTACGGGGGGCGAATCTTTAAAATTCCCGGCCTCAACGCTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGAAGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATGATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAACGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGCAGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGGACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTGCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGGAGGAAGGCGTACCGGATTGGGACGTGC]




>consensus_2362#1
CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTG
CGCGTCCCACATCATCGTTCTGTACGGGGGGCGAATCTTTAAAATTCCCGGCCTCAACGC
TACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGAA
GGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATGA
TCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAAC
GATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGCA
GAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGGA
CAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACTG
CTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGGA
GGAAGGCGTACCGGATTGGGACGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2362#0      ---------------------------------------------AGGCAAGAATTCG-G 14
consensus_2362#1      CCGCCCACGCGTCCGGGACAAGGTGGAAAGCCACTTCCGGACGGAGCGCGAGGGACCGTG 60
                                                                     ** **    ** *

consensus_2362#0      CACGNAGGACATTATCGTCCTGTACGGGGCGGCGAATCTTTAAAATTCCCGGCCTCAACG 74
consensus_2362#1      CGCGTCCCACATCATCGTTCTGTACGGGG-GGCGAATCTTTAAAATTCCCGGCCTCAACG 119
                      * **    **** ***** ********** ******************************

consensus_2362#0      CTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATTCAGGTGA 134
consensus_2362#1      CTACCGGCGATCCGCTCAGCCCGCAGGACTTTCTGTTCATGCTGCAGCAGATCCAGGTGA 179
                      **************************************************** *******

consensus_2362#0      AGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTACTGACGAACGATG 194
consensus_2362#1      AGGTGGAGAGCGAAACGACGACGGTCCCGCATGCTGGCGTGCCGGTGCTGACGAACGATG 239
                      ********************************************** *************

consensus_2362#0      ATCGTACGAGCTGGGCCCGCAATCGACAGCATTTGATCGAGCTGTCGGCGCGCAACGCAA 254
consensus_2362#1      ATCGTACGAGCTGGGCCCGCAATCGACAGCACTTGATCGAGCTGTCGGCGCGCAACGCAA 299
                      ******************************* ****************************

consensus_2362#0      CGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTCATACTGGACACCCACTGTCCGC 314
consensus_2362#1      CGATGGTGCGTGAAATCGAGGAAGCCGTCGCGCTGCTAATACTGGACACCCACTGTCCGC 359
                      ************************************* **********************

consensus_2362#0      AGAACTTTTCCGACCTGGCCCAGCTAGCGCTGACCGGTGACATACATTCGAAGTGGACGG 374
consensus_2362#1      AGAACTTTTCCGACCTGGCCCAGCTGGCGCTGACCGGTGACATACATTCGAAGTGGACGG 419
                      ************************* **********************************

consensus_2362#0      ACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACT 434
consensus_2362#1      ACAAGAGCTGCGGTACGATCGCGTTCAAGAACGGGCAGATGGGTTGCTACGGCGAGCACT 479
                      ************************************************************

consensus_2362#0      GCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGTATCGCGG 494
consensus_2362#1      GCTGCTACGATGGGTCGATCTCGATGTCGATCAGCCTGTACGTGATGATGAGCATCGCGG 539
                      **************************************************** *******

consensus_2362#0      AGGAAGGCGTACCGGATTGGGACGTGCCGGCGGCGAACCTAATACGCCCCGAGGAGCTCG 554
consensus_2362#1      AGGAAGGCGTACCGGATTGGGACGTGC--------------------------------- 566
                      ***************************                                 

consensus_2362#0      TGCTCGATTTTGGACGATACGCTGCGGGAGGAAATCGTACGCATGGAGAGCGTCGCTGAT 614
consensus_2362#1      ------------------------------------------------------------
                                                                                  

consensus_2362#0      GAAATG 620
consensus_2362#1      ------