These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAACAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTTG] [+] EMBL BM597361 [CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAACAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTTG] consensusID : consensus_2369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCCCACGCGTCCGGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGGAGGGTCTGCAGTGGGAGACACCGTACCGGCTG] [+] EMBL BM636492 [CCGCCCACGCGTCCGGAAGAGCAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGAATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGGCAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGCAGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGAGTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTGCAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCATGAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGACATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCACCATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGGAGGGTCTGCAGTGGGAGACACCGTACCGGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2369#0 CCGCTCGGAGGATGGAGAGCGGTACGAGGATGGGGATGGATCCGAGGACGACTACTACAA 60 consensus_2369#1 ------------------------------------------------------------ consensus_2369#0 CAACGGCTCGGACACGGACTCCAGCAACAGTAGCGACGAAGAGCAGGAAGAGGAGGAGGA 120 consensus_2369#1 --------------------CCGCCCACGCGTCCG--GAAGAGCAGGAAGAGGAGGAGGA 38 ** * ** ** *********************** consensus_2369#0 GGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGA 180 consensus_2369#1 GGAAGAGGAAGAGGAGGAAGATGATATGATTTCACTGTCCAGCTACGGATCGTACGATGA 98 ************************************************************ consensus_2369#0 ATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGG 240 consensus_2369#1 ATATTCCGGCGAGGAGGAAGACGATCGCGATCGTTCGGAGGAGGAAGGCAACCAGCCCGG 158 ************************************************************ consensus_2369#0 CAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGC 300 consensus_2369#1 CAACCAGCGGAACGAAAACGATGGGCAGCAGCAGAGTGGCGCCACCGACGATATGCCCGC 218 ************************************************************ consensus_2369#0 AGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGA 360 consensus_2369#1 AGCGGAGCAGCTCAAGTTTAAGAAGCGCTACCAAAAGCTGGACCCCAACATTGTGCTCGA 278 ************************************************************ consensus_2369#0 GTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTG 420 consensus_2369#1 GTTCGCGCAGGGCGAGCGGACGATGCGCTCGCTGAAGCTGCTGCTCGATTGGCTGCTGTG 338 ************************************************************ consensus_2369#0 CAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCAT 480 consensus_2369#1 CAACATGGACGTGCTGCACAACTGCTACCAGTCGAACCCGGAGTTTCTGCACAACATCAT 398 ************************************************************ consensus_2369#0 GAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGA 540 consensus_2369#1 GAAGCTGCTGAACTGGTTCAATCTAGACTTCTTCACGAACCGGTTCTACTTTGCGCGCGA 458 ************************************************************ consensus_2369#0 CATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCAC 600 consensus_2369#1 CATGATCACCGTGCCGGGGCTGCGCGCCGATCTGCAGGAGATCTTCAACGTGCGCCGCAC 518 ************************************************************ consensus_2369#0 CATCCCGCTTG------------------------------------------------- 611 consensus_2369#1 CATCCCGCTGGCAGGAGGACGTCGCGATGAAGCGCTTCCCGCTGTTCGAGGCTGTGCAGG 578 ********* * consensus_2369#0 -------------------------------- consensus_2369#1 AGGGTCTGCAGTGGGAGACACCGTACCGGCTG 610 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||