cluster # 237

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Anopheles gambiae
cluster # 237 cluster # 237 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_237#0 length = 770 sequences # 1

consensus_237#1 length = 537 sequences # 1

consensusID : consensus_237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 770
fasta sequence

                              [GACAGGGGCAGATGACCATCTATGCAGCGCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTGTATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGGAGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGCCGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCGCCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTTAGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACACAGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCACTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCATTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGGTGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCCAACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACTCACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCACCCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA]

[+] EMBL BM617899             [GACAGGGGCAGATGACCATCTATGCAGCGCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTGTATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGGAGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGCCGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCGCCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTTAGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACACAGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCACTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCATTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGGTGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCCAACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACTCACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCACCCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA]




>consensus_237#0
GACAGGGGCAGATGACCATCTATGCAGCGCGCAAGAACAATATCATACAAAGTTCACGCA
TGGTCGGGTGTATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAA
GAAACACAGGAGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAG
CACACGACGCCGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAA
CCCCACGGCGCCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCG
GCATCCATTTAGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGA
CACGGGACACAGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACT
TCCGCGATCACTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCA
ACCAGCCGCATTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAA
TGGGGGCCGGTGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGA
AACCCCCCCCAACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAA
CCCAGGAACTCACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGG
AAAATACCACCCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA

consensusID : consensus_237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAGGGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGTTTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATGTGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGCCGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCGCCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGGATCCATTTTGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACACGTTTTCCGCGGGAAGACGGTGCTGGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCGCTGCCCTGCTGGTGGGAGCTACCCGTGTCATAGCAAACGACATCGATCCAGTCGCATTGCC]

[+] EMBL BM592866             [CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAGGGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGTTTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATGTGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGCCGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCGCCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGGATCCATTTTGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACACGTTTTCCGCGGGAAGACGGTGCTGGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCGCTGCCCTGCTGGTGGGAGCTACCCGTGTCATAGCAAACGACATCGATCCAGTCGCATTGCC]




>consensus_237#1
CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAG
GGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGTT
TTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATGT
GATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGCC
GGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCGC
CGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGGATCCATTTTG
GGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACACGT
TTTCCGCGGGAAGACGGTGCTGGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCGCTGC
CCTGCTGGTGGGAGCTACCCGTGTCATAGCAAACGACATCGATCCAGTCGCATTGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_237#0      -----------------------------------------------GACAGGGGCAGAT 13
consensus_237#1      CCGATTCGTTTAGGTTCGCGTTTCCATTCCTTCCACTGCTGTGCTGTAATAACGGTCAAG 60
                                                                     * *  **   * 

consensus_237#0      GACCATC--TATGCAGC-GCGCAAGAACAATATCATACAAAGTTCACGCATGGTCGGGTG 70
consensus_237#1      GGCAATGAATATACGGCTGTGCACGTGCACGCTGCTAAAAAGTTCACGGAGGGTCGGGT- 119
                     * * **   *** * ** * *** *  **   *  ** ********** * ******** 

consensus_237#0      TATAATATAACACCCCCGCAACCACATAGAAAGCGAACAGCACCCGTAAAGAAACACAGG 130
consensus_237#1      TTTTACGGAATACGCCCTCAACAACATTGTACGCGAACAGCAGCGGGAAGGATTCGGATG 179
                     * * *   ** ** *** **** **** * * ********** * * ** **  *  * *

consensus_237#0      AGATCAGCCTGCGCGCACAAAGCTTACCAAACACGGTGCCATCGCGACAGCACACGACGC 190
consensus_237#1      TGATAAGCGTGCGTGGAAAGATCTTATCAAACACGGTGCTATCGCGACAGCACATGACGC 239
                      *** *** **** * * * * **** ************ ************** *****

consensus_237#0      CGGAAATCGCACAGCACCTCATAACGCCCGAAAGTGCCATCTACCATCAACCCCACGGCG 250
consensus_237#1      CGGAAATCGCACTGCACCTCATAACGCCCGATTGTGCCATCTACCATCAACCCGTCGGCG 299
                     ************ ******************  ********************  *****

consensus_237#0      CCGGCCACCACAACAGCCACAACAGCGGCGCCGATACCGGTTCCTCCGCGGCATCCATTT 310
consensus_237#1      CCGGCCACCACAACAGCGACAACAGTGGCGCCGATACCGGTTTCTCCGCGG-ATCCATTT 358
                     ***************** ******* **************** ******** ********

consensus_237#0      AGGGGATGTATCTGGCCCGGAGGCCAAGCGCTAACCACGAGCATTCTCGACACGGGACAC 370
consensus_237#1      TGGGGATTTTTCTGGCCCGGAGGTCAAGCGCTAACGAGGTTTATTCTTGACACGGGACAC 418
                      ****** * ************* *********** * *   ***** ************

consensus_237#0      AGCTTCCGCGGCAATACAGTGCCTGGGAGGAGGGAAGCGACTGAGGCACTTCCGCGATCA 430
consensus_237#1      GTTTTCCGCGGGAAGACGGTGCT--GGAGGTGGGATGCGGCTGTGGCGCTTCCGCGATCG 476
                        ******** ** ** ****   ***** **** *** *** *** *********** 

consensus_237#0      CTGCCCCTGCAGGATGGGAGCTACCCGTGGCATAACAAAACGAAAATCCAACCAGCCGCA 490
consensus_237#1      CTGCCC-TGCTGG-TGGGAGCTACCCGTGTCATAGCAAAC--GACATCGATCCAGTCGCA 532
                     ****** *** ** *************** **** ****    * *** * **** ****

consensus_237#0      TTGCAAGCCCACACTACCGAACCACGGACCGGAAAGGGATCACCCAGAAATGGGGGCCGG 550
consensus_237#1      TTGCC------------------------------------------------------- 537
                     ****                                                        

consensus_237#0      TGGGCCAGGCACCTGAATAACCCTTAATCCGGCCCCCGGGCCCCGAACGAAACCCCCCCC 610
consensus_237#1      ------------------------------------------------------------
                                                                                 

consensus_237#0      AACACGTCGGAACCCCGCGCCCAAAACGGGGGGCTAAACAAGAGCCGCAACCCAGGAACT 670
consensus_237#1      ------------------------------------------------------------
                                                                                 

consensus_237#0      CACCCACAACCCCAAGAAAACCCCAGGCCGGAAACCCCCCCAACCCCAGGAAAATACCAC 730
consensus_237#1      ------------------------------------------------------------
                                                                                 

consensus_237#0      CCGAAACTCGGCCCACGGGGCCCTGTGGGGACCGAAATAA 770
consensus_237#1      ----------------------------------------