These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTGCTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGGTCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGATCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCCGCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCCCAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCACGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGCCTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAAACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCCCCCTTGATCCCCAAGCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGGTCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGCCACTGGCCCGGACGCACATTTGAGGGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGATCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTACAACGCCCCAAACCTTAACTCCCNTTTAACACTCGGTTTACCCAAACACAAG] [+] EMBL AL929827 [GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTGCTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGGTCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGATCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCCGCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCCCAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCACGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGCCTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAAACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCCCCCTTGATCCCCAAGCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGGTCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGCCACTGGCCCGGACGCACATTTGAGGGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGATCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTACAACGCCCCAAACCTTAACTCCCNTTTAACACTCGGTTTACCCAAACACAAG] consensusID : consensus_2395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCGGACGCGTGGGTACACCGGCAAGCGGCACGCGATGGTGGTCAACGGGAAGAAGCTCCCGTCCGGCACCGGACACTACAATGCGGAGGGCAAATGGATCCGAACCACAAACATAGTGGCCGAGGTGCCGCCCTCTGGCCAAACGGTCGCCCCGACAACGCCGGTCGCTAAGAAACGCCCCTTTCAAGCGACTCAGAACGGAGCCAACGGAACGACCGGAGCAAAGAATCTTCGTCTGGAGCCACCGCCGCAACCTCCGGTACAATTGATAAACCCAGCGTTGGGCCCTGAGGCCTCGAATGCAACGAATGGGGTGGCAGCTGTTCCACCGCTCCAGCAACTAGCCAACGTTTCGCCCGTCACGGCGCCGGTAGGCGCAACCCCTGTCCCAACAGCGCCACAACCGATCGTAACGATTAACGTGGAGAGTGACGAAGAGGTGGTGCCAGCGGATGGTAGCAAACAGTCAGTACAACCAGCCACCGCGCAACCCACTACCCTACCGTCCAAAGGTGGCCCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGCAAGGGCTGGACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG] [+] EMBL BM651527 [CCGCGGACGCGTGGGTACACCGGCAAGCGGCACGCGATGGTGGTCAACGGGAAGAAGCTCCCGTCCGGCACCGGACACTACAATGCGGAGGGCAAATGGATCCGAACCACAAACATAGTGGCCGAGGTGCCGCCCTCTGGCCAAACGGTCGCCCCGACAACGCCGGTCGCTAAGAAACGCCCCTTTCAAGCGACTCAGAACGGAGCCAACGGAACGACCGGAGCAAAGAATCTTCGTCTGGAGCCACCGCCGCAACCTCCGGTACAATTGATAAACCCAGCGTTGGGCCCTGAGGCCTCGAATGCAACGAATGGGGTGGCAGCTGTTCCACCGCTCCAGCAACTAGCCAACGTTTCGCCCGTCACGGCGCCGGTAGGCGCAACCCCTGTCCCAACAGCGCCACAACCGATCGTAACGATTAACGTGGAGAGTGACGAAGAGGTGGTGCCAGCGGATGGTAGCAAACAGTCAGTACAACCAGCCACCGCGCAACCCACTACCCTACCGTCCAAAGGTGGCCCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGCAAGGGCTGGACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2395#0 GCAAGAATTGCCCCGAGGTTTTGTTTACCTGTGAGTGCGTTCCGAATCNTGGTCTGACTG 60 consensus_2395#1 ------------------------------------------------------------ consensus_2395#0 CTTTGTGCAGCACGCTGAACCAGCACTACTACCTGGCAAGCTGGCACTGCGACTGTGTGG 120 consensus_2395#1 -----------CCGCGGACGCGTGGGTACA--CCGGCAAGC-GGCAC-GCGATGGT--GG 43 *** ** * *** * ******* ***** **** ** ** consensus_2395#0 TCAACGGGAAGAAGCTCCCTGTCCTGGCACCGGGCACTACAATGCGGAGTGGCAAATGGA 180 consensus_2395#1 TCAACGGGAAGAAGCTCCC-GTCC-GGCACCGGACACTACAATGCGGAG-GGCAAATGGA 100 ******************* **** ******** *************** ********** consensus_2395#0 TCCTGAACCACAAACATAGTGGCCGAGTGCTGCCTGCCCTCTGTGCCAAACGGTCGCCCC 240 consensus_2395#1 TCC-GAACCACAAACATAGTGGCCGAGG--TGCC-GCCCTCTG-GCCAAACGGTCGCCCC 155 *** *********************** **** ******** **************** consensus_2395#0 GCACAACTGCCGTGTCGCCTAACNAAACGCCCCTTTCAAGCGACTCAGGAACCGGNAGCC 300 consensus_2395#1 G-ACAAC-GCCG-GTCGCTAA--GAAACGCCCCTTTCAAGCGACTCAGAA--CGGAG--C 206 * ***** **** ***** * ************************ * *** * consensus_2395#0 CAACGGACACGGACCGGAGGCAACACGGAACTCTTTCCGCTCCTTGGCACGCCACACGCA 360 consensus_2395#1 CAACGGA-ACG-ACCGGAGCAAA---GAATCTTCGTCTG---------GAGCCAC---CG 249 ******* *** ******* ** * * ** ** * ***** * consensus_2395#0 CGNCAACCCTCCGTGTACAAATTGATAACAACCCAGCCGCTCTGGCGGCCCTGAACGCGC 420 consensus_2395#1 CCGCAACCTCCGGTACA---ATTGATAA--ACCCAG---CGTTG--GGCCCTGAG---GC 296 * ***** * ** * ******** ****** * ** ******** ** consensus_2395#0 CTCGCAATTGCAACGAATGGCGGCTGNGCCTTGCTTGTTTCCAAACCAGATCCAAGACAA 480 consensus_2395#1 CTCGAA--TGCAACGAATGG--GGTGGCAGCTGTTC--CACCGCTCCAGCAACTAGCCAA 350 **** * ************ * ** ** * ** **** * ** *** consensus_2395#0 ACTTACCCCAAACAGGTTTCCGGCCTGGGTCACGGCACCCTGGCTATGGCCTGCCAACCC 540 consensus_2395#1 CGTTTCGCCCGTCACGGCGCCGGTAGGCGCAAC--CCCTGTCCCAACAGCGCCACAACCG 408 ** * ** ** * **** * * ** * * * * * ** ***** consensus_2395#0 CCCTTGATCCCCAA-GCAGGCCGCCACAAACCCCAATTCGGATAACCCGATNTAAACAGG 599 consensus_2395#1 ATCGTAACGATTAACGTGGAGAGTGACGAA---GAGGTGGTGCCAGCGGATGGTAGCAAA 465 * * * ** * * * ** ** * * * * * *** * ** consensus_2395#0 TCTGNNGCAAAAAAGGTTNGGACCCGCACAACGCAAAGGACGGTAGAGGGTATGGACCGC 659 consensus_2395#1 CAGTCAGTACAACCAGCCA----CCGCGCAACCCACT--ACCCTACCGTCCAAAGGTGGC 519 * * ** * **** **** ** ** ** * * * ** consensus_2395#0 CACTGGCCCGGACGCACATTTGAG-GGTTAANGNGCAACAAACCTCAAGGTTTCCTAAGA 718 consensus_2395#1 CCGGAAAGCGGCACCACGCTCGAGCAGGAGATTCGCAAAAAAGC--AAGGGCT-----GG 572 * *** *** * *** * * **** *** * **** * * consensus_2395#0 TCAACCAAAACCCCAAGGNCGCGAAACCCNTGTCCTAC--AACGCCCCAAACCTTAACTC 776 consensus_2395#1 ACTGTGTGGACGATACCGGCACGTTCTGCCTGATCTGCGAAACGTCCGTCACGTCG---- 628 * ** * * * ** * ** ** * **** ** ** * consensus_2395#0 CCNTTTAACACTCGGTTTACCCAAACACAAG 807 consensus_2395#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||