These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [GGACTACTTTAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGCCGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCACCAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGCCGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCGCGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCAGCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTCTGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGTCGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCAGGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGAGCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC] [+] EMBL BX604308 [GGACTACTTTAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGCCGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCACCAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGCCGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCGCGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCAGCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTCTGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGTCGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCAGGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGAGCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC] consensusID : consensus_2398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGCCGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGCACTGCTGCTGATGATACAGCTAACGAAGGGCAACGGAAACATACAGAAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGCTGCTCGGACGGTGGCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAAGAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT] [+] EMBL CNS08ONZ [AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGCCGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTGCGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCCGCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGCACTGCTGCTGATGATACAGCTAACGAAGGGCAACGGAAACATACAGAAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGCTGCTCGGACGGTGGCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAAGAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2398#0 ------------------------------------------------------------ consensus_2398#1 AATCATAATGGCCAGCGGAGTGCCGCCGGATTTGCTGATCGATCCGATCAACACGATCGC 60 consensus_2398#0 ------------------------------GGACTACTTTAACTCGTTCATGGCACCGTG 30 consensus_2398#1 CGAGGTGATTCGGGGCGATGGGCAGAATCAGGACTACTTCAACTCGTTCATGGCACCGTG 120 ********* ******************** consensus_2398#0 CGATCCGCCACTGTCCGCGATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCC 90 consensus_2398#1 CGATCCGCCACTGTCTGCTATCGTGCTGCTGCTGATGTCGATGGTGAACGAGAAGCAGCC 180 *************** ** ***************************************** consensus_2398#0 GCTTTCCCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGAGGC 150 consensus_2398#1 GCTTTCGCTTCGCTGTGCCGTGCTGTACTGCTTCCAGAGCTATCTCTACCGGAACGATGC 240 ****** ************************************************** ** consensus_2398#0 CGGGCAGACGTCGCTCGTCAAAACGCTGCTACAGTCCTCGGAGCAGACGCAATCCATCAC 210 consensus_2398#1 ---------ACTGCTGCTGATGATACAGCTAA----CGAAGGGCA-ACGGAAACATACAG 286 *** * * * * **** * * *** *** ** * ** consensus_2398#0 CAGCGGCCAGCTGCTCTGCCGGAGCCTGTTCAGCACCGACCCGCTGTCGAACTGGTTCGC 270 consensus_2398#1 AAGATTGTGGCGTTTGAGAACGCGTTCGATCGGCTGCTGGACGTGATCAAGGAGGAGGGC 346 ** ** * * * * * ** ** * ** ** * ** ** consensus_2398#0 CGCCGTCTCCATGAGCCACGCACTGTTGGAAAATCCGGCCCAAAAGGAGCAGCTGTTGCG 330 consensus_2398#1 TGCTCGGACGGTG-GCATCGTGGTGGAGGATTGTCTCATACTGATGCTGAATCTGCTCAA 405 ** * ** ** ** ** *** ** * * * * * *** * consensus_2398#0 CGTGGTGCTGGCCACTTCGCACACCAGCAAACCGGTCTCGCTGCTGGAGCAGTGCAATCA 390 consensus_2398#1 GAACAACCCGAGCAATCAGCAGTTCTTCAAGGAAGGTTCGTACAT--------------- 450 * * ** * *** * *** * *** * consensus_2398#0 GCTGCTGCAGCAGGCGAACTGCAAATTCCAAAGCAAGGTCGGGCTGCTGATGCTGCTGTC 450 consensus_2398#1 ------------------------------------------------------------ consensus_2398#0 TGTGTGGCTCAGCCACTGTCAGCTGGCGGTGCGCACATTCCTCTCCATCCCGGGTACGGT 510 consensus_2398#1 ------------------------------------------------------------ consensus_2398#0 CGCGTACCTGACCGGGCAAATCTCCGCCAACGAGCACGGCGACAACGAGTATCTGGTGCA 570 consensus_2398#1 ------------------------------------------------------------ consensus_2398#0 GGGGCTGTGCGCCTTCCTGATGGGGATCTGCATCCAGTTCAACGATAACAGCGTGCAGGA 630 consensus_2398#1 ------------------------------------------------------------ consensus_2398#0 GCATCAGCGCGAGTTCCTCTGCCAGCTGCTGGTGAAGC 668 consensus_2398#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||