cluster # 240

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Anopheles gambiae
cluster # 240 cluster # 240 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_240#0 length = 964 sequences # 1

consensus_240#1 length = 681 sequences # 1

consensusID : consensus_240#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 964
fasta sequence

                              [CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGGCCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAAAACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCTATCAGCGTACATGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGACAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGGAATACAAGGCGGCCAAGATGAAGGATGAGTACAACAAACAGATGCAAGACTTCGAGCGAAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAAAAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTGAACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCTTACTTCAACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAACAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGCTGTCCCCAGTCCCAGTATTCCTGAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCTCCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAAAAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAAAAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTG]

[+] EMBL CNS09LVB             [CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGGCCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAAAACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCTATCAGCGTACATGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGACAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGGAATACAAGGCGGCCAAGATGAAGGATGAGTACAACAAACAGATGCAAGACTTCGAGCGAAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAAAAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTGAACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCTTACTTCAACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAACAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGCTGTCCCCAGTCCCAGTATTCCTGAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCTCCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAAAAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAAAAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTG]




>consensus_240#0
CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGG
CCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAA
AACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCTATCAGCGTACAT
GCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGAC
AGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGGA
ATACAAGGCGGCCAAGATGAAGGATGAGTACAACAAACAGATGCAAGACTTCGAGCGAAA
CGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAAAAA
GAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTGAAC
TAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCTTAC
TTCAACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAACAGA
ACAGCCAACGCACTACTTGAGGACAGTCCTCGCTGTCCCCAGTCCCAGTATTCCTGAATA
CTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCTCCCGG
CAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAAAAGAT
TCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAAAAAGA
TCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAACGAACT
AAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACA
TGTG

consensusID : consensus_240#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCGGAGTTACATCGGTGAAGTTGACCACAGCTAGACTCTGCAAGCACACTGTGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATTCTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGGTCAAGACGCACGACATCCACTTCTGGCTCGGCACGAAAACTACCCAGGATGAGGCCGGTTCGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTTTGCCGGTACAGCACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTCCGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGTGCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTATCGGCCATGAACAAGGGCGACTGCTTC]

[+] EMBL BM635277             [CCGCCCACGCGTCCGCCCACGCGTCCGCGGAGTTACATCGGTGAAGTTGACCACAGCTAGACTCTGCAAGCACACTGTGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGAACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAGGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATTCTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGGTCAAGACGCACGACATCCACTTCTGGCTCGGCACGAAAACTACCCAGGATGAGGCCGGTTCGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTTTGCCGGTACAGCACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTCCGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGTGCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTATCGGCCATGAACAAGGGCGACTGCTTC]




>consensus_240#1
CCGCCCACGCGTCCGCCCACGCGTCCGCGGAGTTACATCGGTGAAGTTGACCACAGCTAG
ACTCTGCAAGCACACTGTGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTC
AGTGCACTTTTGGTGACGGTTTCGGTTGCCCTCGTCCACGGTGCTACCGTTGCGAGCGGG
CCGAACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACGGTCGGCGTTGAG
GTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATTC
TACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGGTCAAGACG
CACGACATCCACTTCTGGCTCGGCACGAAAACTACCCAGGATGAGGCCGGTTCGGCCGCG
ATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTTTGCCGGTACAGCACCGGGAAGTG
GAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTCCGCTATCTGGAG
GGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGTGCGAAGCGGCTG
TTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTGGCCGTATCGGCC
ATGAACAAGGGCGACTGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_240#0      CTGGTGCTCTGTGTGTGTCCATAGGAAAAAAGTGGTCATAAATTAGTGCATTTTGTGCGG 60
consensus_240#1      ---------------------------------------------CCGCCCACGCGTCCG 15
                                                                    **        * *

consensus_240#0      CCTATTTCTCCAGTATCTTACTCCGGACATTTTAATTGTTTGTGACTAAAACTTAGCAAA 120
consensus_240#1      CCCACGCGTCCGCGGAGTTACATCGG----TGAAGTTGACCACAGCTAGA-CTCTGCAAG 70
                     ** *    ***      ****  ***    *  * ***       *** * **  **** 

consensus_240#0      AACACGAAAAGTAATTGCTACCATGGCTGAGAAACCAAAGCGTCCTCT-ATCAGCGTACA 179
consensus_240#1      CACACTG--TGTTCTGCACTCTTTCGCCCACAGAATGAATCGTTTGCTCGTCAGTGCACT 128
                      ****     **  *     *  * **  * * *   ** ***   **  **** * ** 

consensus_240#0      TGCTGTGGCTGAATTCGGCCCGCGAACAGATCAAGAAGGAGAACCCCGGAATTAAAGTGA 239
consensus_240#1      TTTGGTGAC-GGTTTCGGTTGCC---CTCGTCCACGGTGCTACCGTTGCGAGCGGGCCGA 184
                     *   *** * *  *****    *   *   ** *    *  * *   *  *       **

consensus_240#0      CAGAAATCGCCAAAAAGGGCGGAGAGCTGTGGAGAGGAATGAAGGATAAGTCGGAGTGGG 299
consensus_240#1      -ACAAGAAGCTGAACATTCCCGCATTCAACAATGCGGGAAAAACG----GTCGGCGTTGA 239
                      * **   **  ** *   * *    *      * ** *  ** *    ***** ** * 

consensus_240#0      AATACAAGGCGGCCAAGATGAAGGATGAGTA--CAACAAACAGATGCAAGACTTCGAGCG 357
consensus_240#1      GGTATGGCGTGTGGAGAACTTCCAGCCGGTCGTCATCCCGAAGGCAGAGCATGGCAAATT 299
                       **    * *   *  *          **   ** *    **    *  *   * *   

consensus_240#0      AAACGGAGGAAGCAAGGACGCCGGAACCAAGAAAAAGAAAGGTGCAAAGAAAGTTGTCAA 417
consensus_240#1      CTACACCGGTGATTCGTACATCGTGATGAACACGAAGGAGGACAAAAAGAAGG---TCAA 356
                       **   **      * **  **  *  ** *  *** * *    ****** *   ****

consensus_240#0      AAAGAGCAAAAAGAAGGATTCGGAGGATGAAGATGACGAGTCTGGAGATGAGAGCGACTG 477
consensus_240#1      GACGCACGACATCCACT-TCTGGCTCGGCACGAAAACTA--CCCAGGATGAGGCCGGTT- 412
                      * *  * * *   *   *  **      * **  ** *  *    ******  **  * 

consensus_240#0      AACTAATCACTAACCTTAAAATAATTATTTTTAATTTATTGTGTAAATGCTTCGGGGCCT 537
consensus_240#1      ---CGGCCGCGATCCTGTCCGTGCAGCTCGATGATCTGTTGGGCGGTT-TGCCGGTACAG 468
                            * * * ***     *     *   * ** * *** *    *    ***  *  

consensus_240#0      TACTTC-AACTACAAAACCACAGCCATCTCTTTCTCTCCCCCTGTCTTACACGCCGGAAA 596
consensus_240#1      CACCGGGAAGTGGAGGGCACCGAGTCGGACCTTTTCCTCAGCTACTTCAAGGGTGCTGTC 528
                      **    ** *  *   *  *        * ** **  *  **   * *   *       

consensus_240#0      CAGAACAGCCAACGCACTACTTGAGGACAGTCCTCGC-TGTCCCCAGTCCCAGTATTCCT 655
consensus_240#1      CGCTATCTGGAGGGTGGCGTTGCCAGCGGCTTCAAGCACGTAACCACCAACGATCCCGGT 588
                     *   *     *  *      *    *    * *  **  **  ***    *  *     *

consensus_240#0      GAATACTGACCCTGCTACGTACATCGTACTAGTAAAATAACCCTCTAAAACCACACCCCT 715
consensus_240#1      GCGAAGCGGCTGTTCCACATCAAGGGTACGAAGAATATTCGCGTCCGCCAGGTCGAGCTG 648
                     *   *  * *  * * ** *  *  **** *  ** **   * **    *   *   *  

consensus_240#0      CCCGGCAACCCCCCGTCAGTATAATGAAAGGCTTTCCGACAGTTTTGATAAACCGTCAAA 775
consensus_240#1      GCCG--TATCGGCCATGAACAAGGGCGACTGCTTC------------------------- 681
                      ***   * *  ** * *  *      *  ****                          

consensus_240#0      AAGATTCCTTCTTCATCAAAACTACTACCCTAATACTGCTACTACTGTTCACTAACCAAA 835
consensus_240#1      ------------------------------------------------------------
                                                                                 

consensus_240#0      AAAGATCTATCAACTTGCCACCGCGTCACACACAACTTTACACAAAATTGAAATGAAAAC 895
consensus_240#1      ------------------------------------------------------------
                                                                                 

consensus_240#0      GAACTAAAAAAACGTAAAATGACAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG 955
consensus_240#1      ------------------------------------------------------------
                                                                                 

consensus_240#0      CCACATGTG 964
consensus_240#1      ---------