These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCCTCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGATCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCGAAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACGAGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAAACGAAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTGGCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACAATCAAACACCCCCGTTACGAAGGCAACTGGACAGCTTGGCATCAGCAAGCCTACCAGCACAGCAGCACAGTCCCCTGTCAGCAATGGCAGCATCCCGACCGTGTTTCAGGCCACCGTTCACACCGATCCCATC] [+] EMBL BM612957 [CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCCTCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGATCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCGAAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACGAGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAAACGAAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTGGCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACAATCAAACACCCCCGTTACGAAGGCAACTGGACAGCTTGGCATCAGCAAGCCTACCAGCACAGCAGCACAGTCCCCTGTCAGCAATGGCAGCATCCCGACCGTGTTTCAGGCCACCGTTCACACCGATCCCATC] consensusID : consensus_2406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAATGCGGCCAAGCGCCCGAAGCTGCAGCCCTCCGAGGAGGACGAAAAGGAGCGGGCGCGGAAGGAGCACATGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGATCTGGTGGTGGCGAGGGAAAACGAACACCAGGAGGAGTACTTCAAGTCGCTCGAGCGCAAGGAAGCGATGGAGGAGAAAATGCTCAACACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCAGTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCGGGTGCACGATGCGGAGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACGGTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCAAAGCTCGCGCTGGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCGATACGC] [+] EMBL BM592360 [CCGAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAGTGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTGCTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAATGCGGCCAAGCGCCCGAAGCTGCAGCCCTCCGAGGAGGACGAAAAGGAGCGGGCGCGGAAGGAGCACATGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGATCTGGTGGTGGCGAGGGAAAACGAACACCAGGAGGAGTACTTCAAGTCGCTCGAGCGCAAGGAAGCGATGGAGGAGAAAATGCTCAACACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCAGTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCGGGTGCACGATGCGGAGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACGGTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCAAAGCTCGCGCTGGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCGATACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2406#0 CCGCCCACGCGTCCGGTAATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAG 60 consensus_2406#1 ------------CCG--AATTTATCTAATAGCTTACTCAATTAGGTTCTCTTCAAACCAG 46 *** ******************************************* consensus_2406#0 TGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTG 120 consensus_2406#1 TGTGCACCAAAAATGTCCGAAAACATTGACGAATTGGATGTGGACGAGCTGGAACAGTTG 106 ************************************************************ consensus_2406#0 CTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAGGGAACAGTTAAATCGCTCC 180 consensus_2406#1 CTGTTGGAAAATTACAAAGAAAACGAAGCGGAACATGAAAAGGAAAA--TGCGGCCAAGC 164 **************************************** **** * * * * consensus_2406#0 TCCTCGACCGGTAGCGGCGATGATGGTGGTGTTCCGCAACGGAAGCTAACTCTCGAAGGA 240 consensus_2406#1 GCCCGAAGCTGCAGCC-CTCCGAGGAGGACG------AAAAGGAGCGGGCGCGGAAGGAG 217 ** * * * *** * ** * * * ** * *** * * * * consensus_2406#0 TCCAGCTTTCTCGTGGGTGATACGGACAGCAACATTAGCCCGGAAACACCTTCAGCATCG 300 consensus_2406#1 CACA----TGGCACGGATTATTGAGGCAACCTCCTCCCACCAGGAT--CTGGTGGTGGCG 271 ** * * ** * ** * ** * * * ** * * * * ** consensus_2406#0 AAACTCGAAGCGCCCGTGACTGGTGACGCCGATCTCGATTCGTCCGACGATGAAGAAACG 360 consensus_2406#1 AG----GGAAAACGAACACCAGGAGGAGT--ACTTCAAGTCGCTCGAGCGCAAGGAAGCG 325 * * * * * ** * * * ** * *** *** * *** ** consensus_2406#0 AGAAACTTTCTCGAGCGCAAGTACAACCAGTACGGACGACAGATCAACGATTTGCTGAAA 420 consensus_2406#1 ATGGAGGAGAAAATGCTCAA-CACGTTCAAGATGGCGTGCAAGGCAGTCAGCTGTGCGCA 384 * * ** *** ** ** * ** ** ** * ** * consensus_2406#0 ACG-AAGGAGGCGGAAAAAACGGACCAAGCCCTGTCGACATGGGTCGATCGGAAGCTGTG 479 consensus_2406#1 GTGCAAGTACATTGCGTTTTCGGCCGCCGACCGGTGCAAGACGGAGGGCCACCAGCTGCG 444 * *** * * *** * * ** ** * ** * * ***** * consensus_2406#0 GCAAATCAATCGCAGCTCGCCACAAACACCTTCGGCAGGGACTGGTGGTGCATCAGAACA 539 consensus_2406#1 GGTGCACGAT-GCGG----AGAAGCGTTTCTTCCGCTGTGCCGATTGTGGCAATCGGACG 499 * * ** ** * * **** ** * * * ** *** * ** consensus_2406#0 ATCAAACACCCCCG--TTACGAAGGCAA-CTGGACAGCTTGGCATCAGCAAGCCTACCAG 596 consensus_2406#1 GTCAGCTTGTTCCGGATACCGAAGGTAAGTTGCAAGGCTTGCCA-----AAGCTCGCGCT 554 *** *** * ****** ** ** * ***** ** **** * consensus_2406#0 CACAGCAGCACAGTCCCCTGTCAGCAATG-GCAGCATCCCGACCGTGTTTCAGGCCACCG 655 consensus_2406#1 GGGAACGGTGCGCCATGATGCGGGAGAAGCGTGGCATACAGGGTAGGGGATGTGCTGTCG 614 * * * * ** * * * * **** * * * ** ** consensus_2406#0 TTCACACCGATCCCATC 672 consensus_2406#1 AT-ACGC---------- 620 * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||