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Anopheles gambiae
cluster # 2413 cluster # 2413       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2413#0 length = 637 sequences # 1  
consensus_2413#1 length = 576 sequences # 1  

consensusID : consensus_2413#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence
                              [CCGCGGACGCGTGGCAAGCTACACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAACTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGATTAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTGTACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGATTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATGCGTTGATGTGGCACATGTGGGATACATGATCTACTACTGTTCGATCTCGTCTCCACGTACGCTCGGCTGCAAGGAACCAGAGATGAAGATTAATGTGACGGATAAGACTCTGGACCACTTTCTGTTGGAAAATCTCCATCCATATGTGACATACAAAATTGAAATTGCCATGTACTCCGATACGCACATTGGGCCACGCAGCGTGCCGTTAGTAAATACTACTATGGAAGCAGCTCCATCACCGCCACGAAACTTAGTAACGGAAAGAGTAACAAATAACAGTATATCCCTCCACTGGGGAACCTCCGGCACACATAAACGGTGGAAAGATGTTCTACTG]

[+] EMBL BM596632             [CCGCGGACGCGTGGCAAGCTACACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAACTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGATTAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTGTACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGATTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATGCGTTGATGTGGCACATGTGGGATACATGATCTACTACTGTTCGATCTCGTCTCCACGTACGCTCGGCTGCAAGGAACCAGAGATGAAGATTAATGTGACGGATAAGACTCTGGACCACTTTCTGTTGGAAAATCTCCATCCATATGTGACATACAAAATTGAAATTGCCATGTACTCCGATACGCACATTGGGCCACGCAGCGTGCCGTTAGTAAATACTACTATGGAAGCAGCTCCATCACCGCCACGAAACTTAGTAACGGAAAGAGTAACAAATAACAGTATATCCCTCCACTGGGGAACCTCCGGCACACATAAACGGTGGAAAGATGTTCTACTG]


>consensus_2413#0 CCGCGGACGCGTGGCAAGCTACACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAA CGATTGCAATGGATCCATAAACTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCT GAGCGATGTTGGGTCTACGATTAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTC GGGGATGGTGTGGGCAGCGTGTACAGCTACGCACAAAACCGACATTGGCAAACTGAAAAC TATCTGGATCAGTGAGATGGATTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATGCGT TGATGTGGCACATGTGGGATACATGATCTACTACTGTTCGATCTCGTCTCCACGTACGCT CGGCTGCAAGGAACCAGAGATGAAGATTAATGTGACGGATAAGACTCTGGACCACTTTCT GTTGGAAAATCTCCATCCATATGTGACATACAAAATTGAAATTGCCATGTACTCCGATAC GCACATTGGGCCACGCAGCGTGCCGTTAGTAAATACTACTATGGAAGCAGCTCCATCACC GCCACGAAACTTAGTAACGGAAAGAGTAACAAATAACAGTATATCCCTCCACTGGGGAAC CTCCGGCACACATAAACGGTGGAAAGATGTTCTACTG



consensusID : consensus_2413#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence
                              [CCGCGCACGCAGTGGATTCCACTACAATATCACTCTGATTGACCAGCACGGAAGAATTGTCGAACACCTTAACACCACCGGGGGCATGATCGATCGACATCATTTAGTTGACATGAATTACACATTCGTAATAAAAAGTGCCAACCCGGAAGGTATGTCCGAACAAGCCAGCAAGGTGTTTGTTCCAGCTCGTCGCCATCGCCTTGACAAGCCTTCAATCGACAAGCTGCTGTCGGATTCGGGCAAATTTACGCTGTCCTGGAAACCTCCTTCAAGGATCCACTCTCCAATTACAAGCTACACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAACTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGATTAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTGTACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGATTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATG]

[+] EMBL BM618730             [CCGCGCACGCAGTGGATTCCACTACAATATCACTCTGATTGACCAGCACGGAAGAATTGTCGAACACCTTAACACCACCGGGGGCATGATCGATCGACATCATTTAGTTGACATGAATTACACATTCGTAATAAAAAGTGCCAACCCGGAAGGTATGTCCGAACAAGCCAGCAAGGTGTTTGTTCCAGCTCGTCGCCATCGCCTTGACAAGCCTTCAATCGACAAGCTGCTGTCGGATTCGGGCAAATTTACGCTGTCCTGGAAACCTCCTTCAAGGATCCACTCTCCAATTACAAGCTACACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAACTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGATTAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTGTACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGATTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATG]


>consensus_2413#1 CCGCGCACGCAGTGGATTCCACTACAATATCACTCTGATTGACCAGCACGGAAGAATTGT CGAACACCTTAACACCACCGGGGGCATGATCGATCGACATCATTTAGTTGACATGAATTA CACATTCGTAATAAAAAGTGCCAACCCGGAAGGTATGTCCGAACAAGCCAGCAAGGTGTT TGTTCCAGCTCGTCGCCATCGCCTTGACAAGCCTTCAATCGACAAGCTGCTGTCGGATTC GGGCAAATTTACGCTGTCCTGGAAACCTCCTTCAAGGATCCACTCTCCAATTACAAGCTA CACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAA CTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGAT TAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTG TACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGA TTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2413#0      ------------------------------------------------------------
consensus_2413#1      CCGCGCACGCAGTGGATTCCACTACAATATCACTCTGATTGACCAGCACGGAAGAATTGT 60
                                                                                  

consensus_2413#0      ------------------------------------------------------------
consensus_2413#1      CGAACACCTTAACACCACCGGGGGCATGATCGATCGACATCATTTAGTTGACATGAATTA 120
                                                                                  

consensus_2413#0      ------------------------------------------------------------
consensus_2413#1      CACATTCGTAATAAAAAGTGCCAACCCGGAAGGTATGTCCGAACAAGCCAGCAAGGTGTT 180
                                                                                  

consensus_2413#0      ------------------------------------------------------------
consensus_2413#1      TGTTCCAGCTCGTCGCCATCGCCTTGACAAGCCTTCAATCGACAAGCTGCTGTCGGATTC 240
                                                                                  

consensus_2413#0      ---------------------------------------CCGCGGACGCGTGGCAAGCTA 21
consensus_2413#1      GGGCAAATTTACGCTGTCCTGGAAACCTCCTTCAAGGATCCACTCTCCAATTACAAGCTA 300
                                                             ** *   *   *  *******

consensus_2413#0      CACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAA 81
consensus_2413#1      CACCGTGTTCTGGTGCAATACGACTAGCAACTCTCCGAACGATTGCAATGGATCCATAAA 360
                      ************************************************************

consensus_2413#0      CTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGAT 141
consensus_2413#1      CTTTACCAGTGTTGCCGCCGACCAGACCACTTTCGTGCTGAGCGATGTTGGGTCTACGAT 420
                      ************************************************************

consensus_2413#0      TAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTG 201
consensus_2413#1      TAACTTTGCGGTAGCGGCTAACGCTGGGCGTGTGTCGTCGGGGATGGTGTGGGCAGCGTG 480
                      ************************************************************

consensus_2413#0      TACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGA 261
consensus_2413#1      TACAGCTACGCACAAAACCGACATTGGCAAACTGAAAACTATCTGGATCAGTGAGATGGA 540
                      ************************************************************

consensus_2413#0      TTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATGCGTTGATGTGGCACATGTGGGATA 321
consensus_2413#1      TTCGTCGCAAATTCATCTCAAGTGGAAAACGGAATG------------------------ 576
                      ************************************                        

consensus_2413#0      CATGATCTACTACTGTTCGATCTCGTCTCCACGTACGCTCGGCTGCAAGGAACCAGAGAT 381
consensus_2413#1      ------------------------------------------------------------
                                                                                  

consensus_2413#0      GAAGATTAATGTGACGGATAAGACTCTGGACCACTTTCTGTTGGAAAATCTCCATCCATA 441
consensus_2413#1      ------------------------------------------------------------
                                                                                  

consensus_2413#0      TGTGACATACAAAATTGAAATTGCCATGTACTCCGATACGCACATTGGGCCACGCAGCGT 501
consensus_2413#1      ------------------------------------------------------------
                                                                                  

consensus_2413#0      GCCGTTAGTAAATACTACTATGGAAGCAGCTCCATCACCGCCACGAAACTTAGTAACGGA 561
consensus_2413#1      ------------------------------------------------------------
                                                                                  

consensus_2413#0      AAGAGTAACAAATAACAGTATATCCCTCCACTGGGGAACCTCCGGCACACATAAACGGTG 621
consensus_2413#1      ------------------------------------------------------------
                                                                                  

consensus_2413#0      GAAAGATGTTCTACTG 637
consensus_2413#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)