These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC] [+] EMBL AL929986 [TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC] consensusID : consensus_2414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT] [+] EMBL AL935000 [CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2414#0 --------TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGA 52 consensus_2414#1 CAGCAGAATCCCCCGAGGTT-CATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGA 59 ************ * *** ********** ****************** consensus_2414#0 GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 112 consensus_2414#1 GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 119 ************************************************************ consensus_2414#0 CACGGCTTTCTAA-AAAGTGTGCATCATGTCAACCTG-CGCTGCATCCTTTTGCCAACAC 170 consensus_2414#1 CACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACAC 179 ************* *********************** ********************** consensus_2414#0 AGCCGCTACATAGTGAAAA-AAATGGGTCTGG-ATGTAATTTTTCATAACATTTCCAACA 228 consensus_2414#1 AGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAA-ATTTCCAACA 238 ******************* ************ **************** ********** consensus_2414#0 GACCCAACGCTGTTACGCAAATGGGTAG---AATTTGTCAACG-AGAGGAAGCTTGGGTG 284 consensus_2414#1 GACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTG 298 ************************** * ********** **************** consensus_2414#0 CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 344 consensus_2414#1 CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 358 ************************************************************ consensus_2414#0 AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAG 404 consensus_2414#1 AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAA-ACACAAGCTTAAGCCGTCTGGTAAG 417 ********************************** ************************* consensus_2414#0 TTTTCA-TGTANAT-GTCCCACACTAATCTATACTAATATAA-GCATACATTTG-ANNAA 460 consensus_2414#1 TTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAA 477 ****** **** ** ************************** ******* *** * ** consensus_2414#0 CAG-TTACTAAACT--TTGACAGGG--TTCA-TAC--ATGTAGCTGCCTCGAGACTTTCG 512 consensus_2414#1 NAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCG 537 ** **** ** **** **** **** *** ********* * * * * **** consensus_2414#0 ACGTTTC---GCCCAACGTC-GCATGTCTATNCACTCCGAATCGA--GTTCATAGTNA-- 564 consensus_2414#1 ACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGC 597 *** ** *** ****** * ** * * ********** ****** *** consensus_2414#0 -CCTCTTGGTAGACCATACGAG--TTACTCCGACTTTTAAGTATTGACACGAGTATTAGG 621 consensus_2414#1 CCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT----------------------- 634 ******* **** *** * ******* ** consensus_2414#0 AACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC 665 consensus_2414#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||