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Anopheles gambiae
cluster # 2414 cluster # 2414       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2414#0 length = 665 sequences # 1  
consensus_2414#1 length = 634 sequences # 1  

consensusID : consensus_2414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC]

[+] EMBL AL929986             [TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTCCCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAGGGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATNCACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTAAGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC]


>consensus_2414#0 TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGAGTTGTGAA AAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTT TCTAAAAAGTGTGCATCATGTCAACCTGCGCTGCATCCTTTTGCCAACACAGCCGCTACA TAGTGAAAAAAATGGGTCTGGATGTAATTTTTCATAACATTTCCAACAGACCCAACGCTG TTACGCAAATGGGTAGAATTTGTCAACGAGAGGAAGCTTGGGTGCCATCGATAAGCAGCA TTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGG CTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAGTTTTCATGTANATGTC CCACACTAATCTATACTAATATAAGCATACATTTGANNAACAGTTACTAAACTTTGACAG GGTTCATACATGTAGCTGCCTCGAGACTTTCGACGTTTCGCCCAACGTCGCATGTCTATN CACTCCGAATCGAGTTCATAGTNACCTCTTGGTAGACCATACGAGTTACTCCGACTTTTA AGTATTGACACGAGTATTAGGAACGCACATGATAAGCACACAGAAAGTAAATNAATCAAG TCATC



consensusID : consensus_2414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence
                              [CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT]

[+] EMBL AL935000             [CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAGTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCACACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACAGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAATTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT]


>consensus_2414#1 CAGCAGAATCCCCCGAGGTTCATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGAG TTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCAC ACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACACA GCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAAATTTCCAACAGA CCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTGCC ATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATCAA TTCGCCTTCGAAGGCTAATAGAAATTTTTTAAACACAAGCTTAAGCCGTCTGGTAAGTTT TCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAANAG CTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCGACG GTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGCCCC TCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2414#0      --------TCCCCCGAGGTTATGTAGAAACAAACATTGTAANTCTGTGTCGCGCAATAGA 52
consensus_2414#1      CAGCAGAATCCCCCGAGGTT-CATGTAAAACAACATTGTAAATCTGTGTCGCGCAATAGA 59
                              ************   *  ***  ********** ******************

consensus_2414#0      GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 112
consensus_2414#1      GTTGTGAAAAATCACTAAATTTGTACAAAGCATATCGTTTATATTGATCTAAGTACATCA 119
                      ************************************************************

consensus_2414#0      CACGGCTTTCTAA-AAAGTGTGCATCATGTCAACCTG-CGCTGCATCCTTTTGCCAACAC 170
consensus_2414#1      CACGGCTTTCTAACAAAGTGTGCATCATGTCAACCTGGCGCTGCATCCTTTTGCCAACAC 179
                      ************* *********************** **********************

consensus_2414#0      AGCCGCTACATAGTGAAAA-AAATGGGTCTGG-ATGTAATTTTTCATAACATTTCCAACA 228
consensus_2414#1      AGCCGCTACATAGTGAAAACAAATGGGTCTGGCATGTAATTTTTCATAA-ATTTCCAACA 238
                      ******************* ************ **************** **********

consensus_2414#0      GACCCAACGCTGTTACGCAAATGGGTAG---AATTTGTCAACG-AGAGGAAGCTTGGGTG 284
consensus_2414#1      GACCCAACGCTGTTACGCAAATGGGTCAGCAATTTTGTCAACGCAGAGGAAGCTTGGGTG 298
                      **************************     * ********** ****************

consensus_2414#0      CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 344
consensus_2414#1      CCATCGATAAGCAGCATTTTATGTTCAGCACATTTCAACAAAACTGACTACCAGCTAATC 358
                      ************************************************************

consensus_2414#0      AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAACACACAAGCTTAAGCCGTCTGGTAAG 404
consensus_2414#1      AATTCGCCTTCGAAGGCTAATAGAAATTTTTTAA-ACACAAGCTTAAGCCGTCTGGTAAG 417
                      ********************************** *************************

consensus_2414#0      TTTTCA-TGTANAT-GTCCCACACTAATCTATACTAATATAA-GCATACATTTG-ANNAA 460
consensus_2414#1      TTTTCACTGTACATTGTCCCACACTAATCTATACTAATATANAGCATACACTTGGACTAA 477
                      ****** **** ** **************************  ******* *** *  **

consensus_2414#0      CAG-TTACTAAACT--TTGACAGGG--TTCA-TAC--ATGTAGCTGCCTCGAGACTTTCG 512
consensus_2414#1      NAGCTTACCTCACNATTTGAAAGGGGNTTCAGTACCAGTGTAGCTGCGTGGTGNCGTTCG 537
                       ** ****   **   **** ****  **** ***   ********* * * * * ****

consensus_2414#0      ACGTTTC---GCCCAACGTC-GCATGTCTATNCACTCCGAATCGA--GTTCATAGTNA-- 564
consensus_2414#1      ACGGTTGTCGGCCAAACGTCAGANTGGTNTTTAAGTCCGAATCGAAGGTTCATGGTNTGC 597
                      *** **    *** ****** *  **    *  * **********  ****** ***   

consensus_2414#0      -CCTCTTGGTAGACCATACGAG--TTACTCCGACTTTTAAGTATTGACACGAGTATTAGG 621
consensus_2414#1      CCCTCTTGTAGANCCATCAGAGGTTNCCTCCGACNTT----------------------- 634
                       *******     ****  ***  *  ******* **                       

consensus_2414#0      AACGCACATGATAAGCACACAGAAAGTAAATNAATCAAGTCATC 665
consensus_2414#1      --------------------------------------------
                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)