These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 744 fasta sequence [CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTTGTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTCGTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTTGGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGTCAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTGTTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTACCTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACTGAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGATCCCCATGGTGAGCCTTTTTTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTGCCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCATTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTGATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAAAAGTGCGTCAAACAAAATGGCAAAAG] [+] EMBL BM594311 [CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTTGTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTCGTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTTGGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGTCAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTGTTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTACCTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACTGAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGATCCCCATGGTGAGCCTTTTTTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTGCCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCATTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTGATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAAAAGTGCGTCAAACAAAATGGCAAAAG] consensusID : consensus_242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [CCGGTTGTAAGAAAAAGGTACAACATCTTCTCTCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCTCCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGTCCGTCGCGGTCGTGGTGTGTTCTCGGTGAAAATGAAAGCTGTACGCTGGGTTCGTGTTTCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAGGGGGCTACATCGTCGATCCCGGCCCAGTCGTGAAGGCTACCAAAGGTGAAATATGGCCCAAACCGCGGAACCAAACTACGTCACAACAATACTACACCATCAAAACGGGATCATTTGCATTTCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTATCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACGCGCGATGCACAACAGAGGCTATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACCGTTCGTGGCGCTCG] [+] EMBL BM588260 [CCGGTTGTAAGAAAAAGGTACAACATCTTCTCTCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCTCCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGTCCGTCGCGGTCGTGGTGTGTTCTCGGTGAAAATGAAAGCTGTACGCTGGGTTCGTGTTTCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAGGGGGCTACATCGTCGATCCCGGCCCAGTCGTGAAGGCTACCAAAGGTGAAATATGGCCCAAACCGCGGAACCAAACTACGTCACAACAATACTACACCATCAAAACGGGATCATTTGCATTTCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTATCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACGCGCGATGCACAACAGAGGCTATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACCGTTCGTGGCGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_242#0 CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTT 60 consensus_242#1 ------------------------------------------------------------ consensus_242#0 GTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTC 120 consensus_242#1 --------------------------CCGGTTGTAA--GAAAAAGGTACAACATCTTCTC 32 ***** * * * ** * ***** consensus_242#0 GTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTT 180 consensus_242#1 TCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCT 92 ** * *** * * * ** ** * ** ** * * consensus_242#0 GGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGT 240 consensus_242#1 --CCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGT 150 * * * ** * * ** ** * * * ** * * *** consensus_242#0 CAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTG 300 consensus_242#1 C----CGTCGCGGTCGTGGTG-TGTTCTCGGTGA----AAATGAAAGCTGTA-CGCTGGG 200 * ** **** ** * ** * *** ** ** *** * * * consensus_242#0 TTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTAC 360 consensus_242#1 TTCGTGTT---------TCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAG 251 ****** *** * **** ** *** * *** ** * consensus_242#0 CTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACT 420 consensus_242#1 GGGGCTACATCGTCGATCCCGGCCCAGTCG--TGAAGGCTACCAAAGGTGAAATATGGCC 309 * ** * * * ** * ** *** *** ** * ** *** * * consensus_242#0 GAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGA 480 consensus_242#1 CAAACCGCGGAACCAAACTACG-----TCACAACAATACTACACCATCAAAACGGGATCA 364 ** * * * * * ** ****** * * * ** *** * * consensus_242#0 TCCCCATGGTGAGCCTTTT--TTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTG 538 consensus_242#1 TTTGCATT-TCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTA 423 * *** * ** ** * * * * * * * * * * * ** **** consensus_242#0 CCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCA 598 consensus_242#1 TCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACG-CGCGATGCACAACAGAGGCT 482 ** ***** *** *** * ** * * ** * * *** consensus_242#0 TTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTG 658 consensus_242#1 ATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACC-GTTCGTG-GCG 540 * *** **** * ** * * * * * * ** *** * * consensus_242#0 ATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAA 718 consensus_242#1 CTCG-------------------------------------------------------- 544 *** consensus_242#0 AAGTGCGTCAAACAAAATGGCAAAAG 744 consensus_242#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||