cluster # 2430

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Anopheles gambiae
cluster # 2430 cluster # 2430 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2430#0 length = 549 sequences # 1

consensus_2430#1 length = 169 sequences # 1

consensusID : consensus_2430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [GAATCGCCCCGAGGTGATCATTTACGTGATCATGAACAAGCAGTACCGGCAGGCGTACAAGACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGAAATGGAAAGACATCGGGTACAGCTACAACCACAGTCGTACCATGGTGTCCCAAGTTTCAATAGCCGAACCAGAGTCGCCCCCATCCAGCCGACTACGCCAAGATTCGCCGCACCCACAACATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCTAAGACACACAGGAGGACAGTGGACTGAAAACGCATTATCTTTCTCCCTACAGTAATAATAATAACTAATAGTAATAATAGTAATAGCCGTGTACCGGAGCACACAGTGAGCAGTGACCACCCTGCTGATAAGCCACTTGAATGACCAAAAAACATGGAAGACATGGCCGAATGGAACCCAGCAAACCAGAGCTTACGTTCACCAAAACGCCACTTATGACACCAAAACGACTCCAAAAATGCACCACGA]

[+] EMBL AL930125             [GAATCGCCCCGAGGTGATCATTTACGTGATCATGAACAAGCAGTACCGGCAGGCGTACAAGACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGAAATGGAAAGACATCGGGTACAGCTACAACCACAGTCGTACCATGGTGTCCCAAGTTTCAATAGCCGAACCAGAGTCGCCCCCATCCAGCCGACTACGCCAAGATTCGCCGCACCCACAACATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCTAAGACACACAGGAGGACAGTGGACTGAAAACGCATTATCTTTCTCCCTACAGTAATAATAATAACTAATAGTAATAATAGTAATAGCCGTGTACCGGAGCACACAGTGAGCAGTGACCACCCTGCTGATAAGCCACTTGAATGACCAAAAAACATGGAAGACATGGCCGAATGGAACCCAGCAAACCAGAGCTTACGTTCACCAAAACGCCACTTATGACACCAAAACGACTCCAAAAATGCACCACGA]




>consensus_2430#0
GAATCGCCCCGAGGTGATCATTTACGTGATCATGAACAAGCAGTACCGGCAGGCGTACAA
GACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGA
AATGGAAAGACATCGGGTACAGCTACAACCACAGTCGTACCATGGTGTCCCAAGTTTCAA
TAGCCGAACCAGAGTCGCCCCCATCCAGCCGACTACGCCAAGATTCGCCGCACCCACAAC
ATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCT
AAGACACACAGGAGGACAGTGGACTGAAAACGCATTATCTTTCTCCCTACAGTAATAATA
ATAACTAATAGTAATAATAGTAATAGCCGTGTACCGGAGCACACAGTGAGCAGTGACCAC
CCTGCTGATAAGCCACTTGAATGACCAAAAAACATGGAAGACATGGCCGAATGGAACCCA
GCAAACCAGAGCTTACGTTCACCAAAACGCCACTTATGACACCAAAACGACTCCAAAAAT
GCACCACGA

consensusID : consensus_2430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence

                              [TGAACAAGCAGTACCGGCAGGCGTACAAGACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGATTCGCCGCACCCACAACATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCTAAGA]

[+] EMBL BX607890             [TGAACAAGCAGTACCGGCAGGCGTACAAGACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGATTCGCCGCACCCACAACATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCTAAGA]




>consensus_2430#1
TGAACAAGCAGTACCGGCAGGCGTACAAGACCGTGATCTTCTGCAAACCGTCACGCCTGC
TTGGCTTCGGCGGTAGCAGTGTTGGAGATTCGCCGCACCCACAACATTTAGTCGCCATTC
AAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCTAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2430#0      GAATCGCCCCGAGGTGATCATTTACGTGATCATGAACAAGCAGTACCGGCAGGCGTACAA 60
consensus_2430#1      --------------------------------TGAACAAGCAGTACCGGCAGGCGTACAA 28
                                                      ****************************

consensus_2430#0      GACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGA 120
consensus_2430#1      GACCGTGATCTTCTGCAAACCGTCACGCCTGCTTGGCTTCGGCGGTAGCAGTGTTGGAGA 88
                      ************************************************************

consensus_2430#0      AATGGAAAGACATCGGGTACAGCTACAACCACAGTCGTACCATGGTGTCCCAAGTTTCAA 180
consensus_2430#1      ------------------------------------------------------------
                                                                                  

consensus_2430#0      TAGCCGAACCAGAGTCGCCCCCATCCAGCCGACTACGCCAAGATTCGCCGCACCCACAAC 240
consensus_2430#1      -------------------------------------------TTCGCCGCACCCACAAC 105
                                                                 *****************

consensus_2430#0      ATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCT 300
consensus_2430#1      ATTTAGTCGCCATTCAAGATAGTTAGTAGAAGATAAGACTTGTGAGAACTGCACAACCCT 165
                      ************************************************************

consensus_2430#0      AAGACACACAGGAGGACAGTGGACTGAAAACGCATTATCTTTCTCCCTACAGTAATAATA 360
consensus_2430#1      AAGA-------------------------------------------------------- 169
                      ****                                                        

consensus_2430#0      ATAACTAATAGTAATAATAGTAATAGCCGTGTACCGGAGCACACAGTGAGCAGTGACCAC 420
consensus_2430#1      ------------------------------------------------------------
                                                                                  

consensus_2430#0      CCTGCTGATAAGCCACTTGAATGACCAAAAAACATGGAAGACATGGCCGAATGGAACCCA 480
consensus_2430#1      ------------------------------------------------------------
                                                                                  

consensus_2430#0      GCAAACCAGAGCTTACGTTCACCAAAACGCCACTTATGACACCAAAACGACTCCAAAAAT 540
consensus_2430#1      ------------------------------------------------------------
                                                                                  

consensus_2430#0      GCACCACGA 549
consensus_2430#1      ---------