These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [AAGAATCGGCNCGAGGCATGTGAACCATCATCACGTGGGAACCGGTTTGAAGGGGTCCGGAACTTCGGGTGGGGTAGAGGCCATCGAAACCGGGACTGCGATAGAGCTGCGCCGTAAAACGAGAAGTGCAGCTGGACTCGAAGTCACCGTGACTGAGGGACGTCGAAGAAGGATCTCCCGAGATAGCAAGTGACCAACAGTTTTGCGCCTCAGCCGCTAGCGACGATAGCAAACGCTATCGGCATAGGCCAGAAGGTATTATTACCTGTGCCCCGCTGCAACTGTGTTGACTGAGTCATCATCGTAAACGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTTTTCAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTACTTTGCTGAGCAGGAATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGCGATTGATGCAAGCTGGCACGTCGATGAATCTGTATGGCATGTTGCATAAAGAAGCTGAGGTGCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCGAAGCCCCGTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGCGTTTGGCTGCGGGATCC] [+] EMBL BX468580 [AAGAATCGGCNCGAGGCATGTGAACCATCATCACGTGGGAACCGGTTTGAAGGGGTCCGGAACTTCGGGTGGGGTAGAGGCCATCGAAACCGGGACTGCGATAGAGCTGCGCCGTAAAACGAGAAGTGCAGCTGGACTCGAAGTCACCGTGACTGAGGGACGTCGAAGAAGGATCTCCCGAGATAGCAAGTGACCAACAGTTTTGCGCCTCAGCCGCTAGCGACGATAGCAAACGCTATCGGCATAGGCCAGAAGGTATTATTACCTGTGCCCCGCTGCAACTGTGTTGACTGAGTCATCATCGTAAACGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTTTTCAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTACTTTGCTGAGCAGGAATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGCGATTGATGCAAGCTGGCACGTCGATGAATCTGTATGGCATGTTGCATAAAGAAGCTGAGGTGCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCGAAGCCCCGTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGCGTTTGGCTGCGGGATCC] consensusID : consensus_2432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [AAGAATNGCCGAGGTNGAGATAGCAGTGACAACAGTTTGCGCCTCAGCCGCTAGCGACGATGAGCAACGCTATCGGCATAGGCCAGAAGGTATTATTACCTGTGCCCGCTGCAACTGTGTTGATGATCATCATCGTAACGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTTTCAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTACTTTGCTGAGCAGAATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGCATTGATGCAAGCTGGCACGTCGATGAATCTGTTGGCATGTTGCATAAAGAAGCTGAGGTGCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCAACCCCTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGCTTTGGCTGCGGGATCCGGCACTTTGACGTGTCGTAATGATGATACTGCTGGTACAGGTGACCAAGTACGATCAGCGGCGAAGGAAACCGGAGGCAACGCGGAGGACGAAGATTCGTACGCCAGTGAAATCATTCTCACGACTAACAGCGACTGCAGCCTANACG] [+] EMBL AL930143 [AAGAATNGCCGAGGTNGAGATAGCAGTGACAACAGTTTGCGCCTCAGCCGCTAGCGACGATGAGCAACGCTATCGGCATAGGCCAGAAGGTATTATTACCTGTGCCCGCTGCAACTGTGTTGATGATCATCATCGTAACGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTTTCAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTACTTTGCTGAGCAGAATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGCATTGATGCAAGCTGGCACGTCGATGAATCTGTTGGCATGTTGCATAAAGAAGCTGAGGTGCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCAACCCCTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGCTTTGGCTGCGGGATCCGGCACTTTGACGTGTCGTAATGATGATACTGCTGGTACAGGTGACCAAGTACGATCAGCGGCGAAGGAAACCGGAGGCAACGCGGAGGACGAAGATTCGTACGCCAGTGAAATCATTCTCACGACTAACAGCGACTGCAGCCTANACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2432#0 AAGAATCGGCNCGAGGCATGTGAACCATCATCACGTGGGAACCGGTTTGAAGGGGTCCGG 60 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 AACTTCGGGTGGGGTAGAGGCCATCGAAACCGGGACTGCGATAGAGCTGCGCCGTAAAAC 120 consensus_2432#1 ------------------------------------------------------------ consensus_2432#0 GAGAAGTGCAGCTGGACTCGAAGTCACCGTGACTGAGGGACGTCGAAGAAGGATCTCCCG 180 consensus_2432#1 ----------------------------------AAGAATNGCCGAGG---------TNG 17 ** * *** * * consensus_2432#0 AGATAGCAAGTGACCAACAGTTTTGCGCCTCAGCCGCTAGCGACGATAGCAAACGCTATC 240 consensus_2432#1 AGATAGCA-GTGAC-AACAGTTT-GCGCCTCAGCCGCTAGCGACGATGAGCAACGCTATC 74 ******** ***** ******** *********************** ********* consensus_2432#0 GGCATAGGCCAGAAGGTATTATTACCTGTGCCCCGCTGCAACTGTGTTGACTGAGTCATC 300 consensus_2432#1 GGCATAGGCCAGAAGGTATTATTACCTGTGCCC-GCTGCAACTGTGTTGAT--GATCATC 131 ********************************* **************** ***** consensus_2432#0 ATCGTAAACGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTT 360 consensus_2432#1 ATCGTAA-CGATTGTCTGACGAGTGTCCATTGCACGGCGGTCAACAATGTTGGGCCAGTT 190 ******* **************************************************** consensus_2432#0 TTCAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTA 420 consensus_2432#1 T-CAAGTGGAACTGTTGTGATGGAAGGTGAAAGTGCTGAAACTGAAGACGGGAAGCAGTA 249 * ********************************************************** consensus_2432#0 CTTTGCTGAGCAGGAATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGCG 480 consensus_2432#1 CTTTGCTGAGCAG-AATGAAGTGACAGTAGTGGAGTGTAACGATGTTGATCAGAGAGGC- 307 ************* ********************************************* consensus_2432#0 ATTGATGCAAGCTGGCACGTCGATGAATCTGTATGGCATGTTGCATAAAGAAGCTGAGGT 540 consensus_2432#1 ATTGATGCAAGCTGGCACGTCGATGAATCTGT-TGGCATGTTGCATAAAGAAGCTGAGGT 366 ******************************** *************************** consensus_2432#0 GCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCGAA 600 consensus_2432#1 GCAAAATCTACGCGAAGTGGCGCGGAAAAGAGGCGTAAAAGCAGAGATGACAAAGCCAA- 425 ********************************************************* * consensus_2432#0 GCCCCGTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGCGTTTGGCTG 660 consensus_2432#1 --CCCCTAGCTGCGCCGCCGGTAAAGCGCTGTTGAATGGTGGAGATAATGC-TTTGGCTG 482 *** ********************************************* ******** consensus_2432#0 CGGGATCC---------------------------------------------------- 668 consensus_2432#1 CGGGATCCGGCACTTTGACGTGTCGTAATGATGATACTGCTGGTACAGGTGACCAAGTAC 542 ******** consensus_2432#0 ------------------------------------------------------------ consensus_2432#1 GATCAGCGGCGAAGGAAACCGGAGGCAACGCGGAGGACGAAGATTCGTACGCCAGTGAAA 602 consensus_2432#0 ------------------------------------ consensus_2432#1 TCATTCTCACGACTAACAGCGACTGCAGCCTANACG 638 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||