These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [GGCAGAATCGGCACGATGGCGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCCGATCAGGGAAGTAGGGAGACCTCAAAAAAGGGAAAGTAGGTGGTCGTCCCTCGGGAGTGTTCTTCATGCAGCGTTCCACCCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACGCACGACGACCGACGCCCGGGTTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTGGGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCCTGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTTCGGTGTGTTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAGGGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCATGAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGGCAATTCTTAGTGAGTTATTGGTACTGTTC] [+] EMBL BX468278 [GGCAGAATCGGCACGATGGCGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCCGATCAGGGAAGTAGGGAGACCTCAAAAAAGGGAAAGTAGGTGGTCGTCCCTCGGGAGTGTTCTTCATGCAGCGTTCCACCCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACGCACGACGACCGACGCCCGGGTTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTGGGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCCTGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTTCGGTGTGTTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAGGGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCATGAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGGCAATTCTTAGTGAGTTATTGGTACTGTTC] consensusID : consensus_2435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTTGTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAATACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGGGACGACGTGCTGATCCCGGTAGTGTTCCTCTTCACCAAGGAAGCGGAACAGCTCATCAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACGGCGCTGAAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAACGATATTGCCGCCGATCAGGGAAGTAGGGAGACGTAAAAAAAAAGGGAAAGTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTTCGATGTG] [+] EMBL AL930152 [AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTTGTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAATACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGGGACGACGTGCTGATCCCGGTAGTGTTCCTCTTCACCAAGGAAGCGGAACAGCTCATCAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACGGCGCTGAAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAAGTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAACGATATTGCCGCCGATCAGGGAAGTAGGGAGACGTAAAAAAAAAGGGAAAGTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGTAACACTTGATCCGCGCAAATCCTCCTCTCACATCTGTATTTCGATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2435#0 GGCAGAATCGGC-ACGATGGCGAAAAGTAGTGACT-CAAAAGTGACGCCATAGTAGTAGC 58 consensus_2435#1 ---AAGATCGCCCGAGGNGAGGAAAGATTGTAATTATCTGAGCGAGGCGAATGCACGTTT 57 * **** * * * **** * ** * * ** ** ** * * * consensus_2435#0 GGTGCCGAGTAGAGCC-CGAGTTGCCGATCAGGGAAGTAGG-------GAGACCTCAAAA 110 consensus_2435#1 GTCGATAAAGCGAGACGCGTGGAGTCGGCGGGAGCCGTAGCTGCAATTGTGATTGACAAT 117 * * * *** * ** * * ** * * **** * ** ** consensus_2435#0 AAGGGAAAGTAGGTGGTCGTCCCTCGG-GAGTGTTCTTCATGCAGCGTTCCACCCGGATT 169 consensus_2435#1 ACGCCAAACACGTCGATCAACAATCAGCAAATGTTTGCCATGTCGGGCGACGGGCGG--- 174 * * *** * * ** * ** * * **** **** * * * *** consensus_2435#0 CGGTAACAC-TTGATCCGCGCAAATCCTCCTCTCACATCTGTATTCCGATGTGACCGACG 228 consensus_2435#1 -GACGACGTGCTGATCC-CGGTAGTGTTCCTCTT-CACCAAGGAAGCGGAACAGCTCAT- 230 * ** ****** ** * * ****** ** * ** * * consensus_2435#0 CACGACGACCGACGCCCGGG--TTAGATAGTAATGAATTGGTTAGCAAAATGTCGCACTG 286 consensus_2435#1 CAAGGCGATCAAAGAGCAGCCCTCCCTTGAGCTCACGCTAATGTCCGTGACG--GCGCTG 288 ** * *** * * * * * * * * * * * * ** *** consensus_2435#0 GGGGGAAAGTGGTACTGTTGTTGGGTGGTCGTTGAGAATAGAGGGAATGTCGCCTTTCCC 346 consensus_2435#1 AAGGAAAAGCTGGCCCGCGCAAGCATAACGAAGACTGACACGAAAAGTAGTGACTCAAAA 348 ** **** * * * * * * * * * * ** consensus_2435#0 -TGGCGGGAGTTTGAGAGTGGCACCGAAAGACGCGCAAAACAATCGTGCTTT-CGGTGTG 404 consensus_2435#1 GTGACGCCATAGTAGTAGCGGTGCCGAGTAGAGCCCGAGTTGCTAGTGTGTAGCCGTGAA 408 ** ** * * ** ** **** ** * * * *** * * *** consensus_2435#0 TTTGATGGCAAAAGTTAGACGAATTACAGCACACGTTGTAAAAAGGAGCATTGCATTAAG 464 consensus_2435#1 CGATATTGCCGCCGATCAGGGAAGTA-GGGAGACGTAAAAAAAAAGGG---------AAA 458 ** ** * * *** ** * * **** ***** * * ** consensus_2435#0 GGAAAGGGACCCGATGCANAACAAGTTTATCGGTTGTCCAGGCAAACTGAACTGGAGCAT 524 consensus_2435#1 GTANGTGGTCGTCCCTCGGGAGGTGTTCTTCATGCAGCGTTCCAACCGGATTCGGT---- 514 * * ** * * * *** ** * *** * ** ** consensus_2435#0 GAGCAAGTGTGTGGAACAACGGGGTTATTCAGAGACAGTAATGCGATGCAACGGCCGTGG 584 consensus_2435#1 -AACACTTGATCCGCGCAAATCCTCCTCTCACAT-CTGTATTTCGATGTG---------- 562 * ** ** * *** *** * * *** * ***** consensus_2435#0 CAATTCTTAGTGAGTTATTGGTACTGTTC 613 consensus_2435#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||