These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTGCTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCCGGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAGAAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAAAGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCATTATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGTGCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGAGCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCTCTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGTGGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA] [+] EMBL BX625177 [GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTGCTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCCGGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAGAAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAAAGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCATTATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGTGCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGAGCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCTCTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGTGGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA] consensusID : consensus_2443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGAGCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCTTCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGTTGATTTTTTTGTTTGTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTGTTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTGTTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTACAAAAACGCCTACTGTGACTTGGATAATGAATC] [+] EMBL AL930208 [ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATGTGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGGGGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTGCGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGAGCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCTTCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGTTGATTTTTTTGTTTGTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTGTTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTGTTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTACAAAAACGCCTACTGTGACTTGGATAATGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2443#0 GCCCTCTGCCAACGAATCTAGTGGGCACTGTGTGCATGGAGATTTTTCACGTACGCGTTG 60 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 CTGTGTGCAGTGCTGATTTTTAAACCGCGTCCGGAACACACATACACACCTGTCGGTGCC 120 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 GGAACCGGCAGTGTCCGTAGATAAAACGTGCCCGTAATAAACCGCAAACAAACGCGAAAG 180 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 AAGAATCGGTTTTGGTGGTTTTGGTGAAAAGCAGTGTTGCGTTGTGTTCAACCGGCGGAA 240 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 AGGAAGCTGGGTTGTCCGGTGTGTTTCTCACCCAGCGATTGCAGCGTCAGTACACATCAT 300 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 TATGCTTTTAAGCTGGTGCGTAGGGGAGTTTTTTTGTTTGTTTCTTTATGTCCAGTAAGT 360 consensus_2443#1 ------------------------------------------------------------ consensus_2443#0 GCAACGAGTGTGACATGATCGGGCATGATGATGATCATAAAGTGAATTGTTTGAAACATG 420 consensus_2443#1 ------------------------ATCGCCCGAGGTATAAAGTGAATTGTTTGAAACATG 36 ** ************************ consensus_2443#0 TGCAGTAGATGCCGAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTG--CGCAATACCGG 478 consensus_2443#1 TGCAGTAGATGCCAAAAGCGATGGAATTGTGAGTGTGTGTGTGTGTGTGCGCAATACCGG 96 ************* ********************************* *********** consensus_2443#0 GGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTG 538 consensus_2443#1 GGCGGATGGGAGAGAACAACGCATCGTCACCATTCTTTCCCTTGGGTGGAAAATTCACTG 156 ************************************************************ consensus_2443#0 CGGCGTATTAGTGGCCAGTACCGGTAGGTGCAGCGTTATTGATGTGAAAAGGGCCGACGA 598 consensus_2443#1 CGGCGTATTAGTGGCCAGTACCGGTAGGTGCAACGTTATTGATGTGAAAAGGGCCGACGA 216 ******************************** *************************** consensus_2443#0 GCGCTGAGGTAACACAATATATCAACTGTGTGTCAATGTAGCAAACCGCCGGCTCTCTCT 658 consensus_2443#1 GCATTGAGGCAACACAATATATCAACTGTGTGTCAATGTGGCAAACCGCCGGCTCTCTCT 276 ** ***** ***************************** ******************** consensus_2443#0 -CTTGCCGCCAACTCTTTCCTTCTTCGGATAGGGAACNATTGGCGGTAATGGGTGTTGGT 717 consensus_2443#1 TCCTGCCGCCAACTCTTTCCTTCTTCGGATAGGGTACAATTGGCGGTAATGGGTGTTGGT 336 * ******************************* ** ********************** consensus_2443#0 GGATTTTTTTGNTTTGNTTTTGCGAGCGTTACTCGGTATAACGCTAATTA---------- 767 consensus_2443#1 TGATTTTTTTGTTT-GTTTTTGGGAGCGTTACTCGGTATAACGCTAATTACGATGGATTG 395 ********** ** * ***** *************************** consensus_2443#0 ------------------------------------------------------------ consensus_2443#1 TTCCGGTGGTGAGGAATCTGTGTCTTGTTCGTTGTTTTTGTTAATCGACAACATGGGGTG 455 consensus_2443#0 ------------------------------------------------------------ consensus_2443#1 TTTTAAATCATGTTTTTCGGCAGAAACATGATAATCGCTCATTTTATAACAGATTGATTA 515 consensus_2443#0 --------------------------------- consensus_2443#1 CAAAAACGCCTACTGTGACTTGGATAATGAATC 548 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||