These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [CGTGTCCAGCAGAATCGGCCACGAGGGTTAAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCTTCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCAGCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGGCNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGATACAGGTCGTG] [+] EMBL BX469493 [CGTGTCCAGCAGAATCGGCCACGAGGGTTAAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCTTCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCAGCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGGCNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGATACAGGTCGTG] consensusID : consensus_2469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGTGCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCATCTTTGGCGTGGCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGGACGCGCCGTCGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCGGTCGTGCAGAATCGAGCCAGCGCGCTTCCAAGAGTCCAAAGTACCC] [+] EMBL AL930427 [ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGTGCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCTGCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCGGGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCATCTTTGGCGTGGCACCTCGGTGCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGTCGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGGACGCGCCGTCGGAAGGAGTGGAAACGTCGGCTGTACAGAACGTCGTCGGTCGTGCAGAATCGAGCCAGCGCGCTTCCAAGAGTCCAAAGTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2469#0 ------------------------------------------------------------ consensus_2469#1 ATGCCCGAGGTTTTGCTGCGCCGGCTGTGGGAAGCTACACTTCTACACCGCCTCGTACGT 60 consensus_2469#0 -----CGTGTCCAGCAGAATCGGCCACGAG---GGTTAAACGTTCGTCTCGGCGGGCGCT 52 consensus_2469#1 GCCCGCCTTCTTTGCGGCTCTCATCTCGATCATGGTAGAACGTTCGTCTCGGCGGGCGCT 120 * * ** * * *** *** ********************** consensus_2469#0 GCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCG 112 consensus_2469#1 GCTCGCTCTGTACGTGTCAAACGTGGCGACCGAAACGATGTGGAACATACTGCAATCGCG 180 ************************************************************ consensus_2469#0 GGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGCCATCTTTGGCGTGGCCACCTCGGT 172 consensus_2469#1 GGGGCTGGTGCGTTCCATACCGCACGGTGAGATTGC-ATCTTTGGCGTGGC-ACCTCGGT 238 ************************************ ************** ******** consensus_2469#0 GCTGATGTACTGCTACCGGAAGAACAGGCACAAGGAGTATCGCGATTCGATGTTCGATGT 232 consensus_2469#1 GCTGATGTACTGCTACCGGAAGAACAGGCAGAAGGAGTATCGCGATTCGATGTTCGATGT 298 ****************************** ***************************** consensus_2469#0 CGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAANGGGGGACGCGCCGTCGGGAAGGA 292 consensus_2469#1 CGTACGGTTCGCGATCGGTGATAGTGAGGTGATGAAGGGGG-ACGCGCCGTCGG-AAGGA 356 ************************************ **** ************ ***** consensus_2469#0 GTGGAAACGTCGGCTGTACAGAACGTCGTCAGGTACGTGCAGAATCGAGCCAGGCGCGCT 352 consensus_2469#1 GTGGAAACGTCGGCTGTACAGAACGTCGTCGG--TCGTGCAGAATCGAGCCAG-CGCGCT 413 ****************************** * ****************** ****** consensus_2469#0 TCCAAGAGTCCAAAGTACCCGATGCGCCTTTATACAGGCTGCAGTGCAGGNCTACCTGCA 412 consensus_2469#1 TCCAAGAGTCCAAAGTACCC---------------------------------------- 433 ******************** consensus_2469#0 GCTTACCGGCCGGTTGAAGGCACATGGGAAAGCATAAGCTGTGNTCGTCATCGGTANCGG 472 consensus_2469#1 ------------------------------------------------------------ consensus_2469#0 CNTGCGTGTACGAGTACGCTCTCTAGCGGTGNGGCGCATGTTCTCGATACGGTCTCNGGA 532 consensus_2469#1 ------------------------------------------------------------ consensus_2469#0 TACAGGTCGTG 543 consensus_2469#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||