These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACGGCGCAAAGCGATACCGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACGGGTAACAACATCCTCAATGCGCACCTGTCCGGTTCGTTCCACGGCTCGGAAGACACGACCGACGACGAGCTGCTCGATGCAATGCAGCGCGACCGGACCAAGCAGCGCCAGTTCCGATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGCGTCTCGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCGGTGGCGCAAACGCGCCGGCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGATGCCTCGGCATGAGCGTAGACGTAATGGCAACAACAATAGCCATATTGTGTAAATACGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTGGTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCTCCCGGGTGCGGAC] [+] EMBL BM635182 [CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACGGCGCAAAGCGATACCGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACGGGTAACAACATCCTCAATGCGCACCTGTCCGGTTCGTTCCACGGCTCGGAAGACACGACCGACGACGAGCTGCTCGATGCAATGCAGCGCGACCGGACCAAGCAGCGCCAGTTCCGATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGCGTCTCGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCGGTGGCGCAAACGCGCCGGCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGATGCCTCGGCATGAGCGTAGACGTAATGGCAACAACAATAGCCATATTGTGTAAATACGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTGGTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCTCCCGGGTGCGGAC] consensusID : consensus_2474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCCGAGGTATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGGAAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGCGCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCGGTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGNATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCCCANTATCTGNTGCTACAACTACGCTGCCCTAACCGACACCGCTGGCCGGCGCACGCTCCCCTGCGCAGCTGGCCTGCGCACGCTNTCGCGCACCGCACTGNCTGCGCTACCTCCACACACCACCACACCCA] [+] EMBL AL930455 [CCCGAGGTATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGGAAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGCGCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCGGTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGNATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCCCANTATCTGNTGCTACAACTACGCTGCCCTAACCGACACCGCTGGCCGGCGCACGCTCCCCTGCGCAGCTGGCCTGCGCACGCTNTCGCGCACCGCACTGNCTGCGCTACCTCCACACACCACCACACCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2474#0 CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTT 60 consensus_2474#1 ---------CCCGAGGT---ATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTT 48 * * *** ** ************* *********************** consensus_2474#0 TCCAAAGATTTTTCACCAGAAGTAC-GGCGCAAAGCGATACC-GAAGGCAACAACATACA 118 consensus_2474#1 TCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACA 108 ************************* **************** ***************** consensus_2474#0 GGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCT 178 consensus_2474#1 GGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCT 168 ************************************************************ consensus_2474#0 CGGCAC-GGGTAACAACATCCTCAATGCGCACCTGTCC-GGTTCGTTCCAC-GGCTC-GG 234 consensus_2474#1 CGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGG 228 ****** ******************************* ************ ***** ** consensus_2474#0 AAGACACGACC-GACGACGAGCTGCTCGATGCAATGCAGCGC-GACC-GGACCAAGCAGC 291 consensus_2474#1 AAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGC 288 *********** ****************************** **** ************ consensus_2474#0 GCCAGTTCC-GATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGC----GTCTC-G 345 consensus_2474#1 GCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTG 348 ********* * ** *************************** * ** ***** * consensus_2474#0 GGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGC-GGTGGCGCAAACGCGCCG 404 consensus_2474#1 GGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCG 408 ***************************************** ****************** consensus_2474#0 GCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCG 464 consensus_2474#1 GTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCG 468 * ****** ** ************************************************ consensus_2474#0 A-TGCCTCGGCATGAGCGTA-GACGTAATGGCAACAAC-AATAGCCATATTGTGTAAATA 521 consensus_2474#1 NATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCC-CANTATCTGNTGC 527 ****************** ***************** ******* * * * * consensus_2474#0 CGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTG 581 consensus_2474#1 TACAACTACGCTGCCCTAACCG-ACACCGCTGGCCGGCGCACGCTCCCCTGCGCA-GCTG 585 *** * * * * * ** * **** * ** * * * * * ** consensus_2474#0 GTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCT 641 consensus_2474#1 GCCTGCGCACGCTNTCGCGCACCGCACTGNCT----GCGCTACCTCCACACACCACCACA 641 * * ** * **** * ** *** * * * * consensus_2474#0 CCCGGGTGCGGAC 654 consensus_2474#1 CCCA--------- 645 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||