These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAACTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTACGCGTCGTCCCGGCTCGTCCCGCTTGGCCATCAAACATTCATAAACTCATACAAACTCACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATACCAGGTGCAGTGAGAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAACGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACCCAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTGCCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGCCCATCCACCGTAGTGGAACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTACGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTG] [+] EMBL BM647891 [CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAACTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTACGCGTCGTCCCGGCTCGTCCCGCTTGGCCATCAAACATTCATAAACTCATACAAACTCACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATACCAGGTGCAGTGAGAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAACGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACCCAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTGCCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGCCCATCCACCGTAGTGGAACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTACGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTG] consensusID : consensus_2476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACTGCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCCTAGCGAGCCGGTTCGGCAGAAGTGCAAGAAGGCAGCCGCCAGCCAAACACCGCAACAGCGGACAGTACGTTTCCCGCCCGCAGCTTAAGCTTCTCTTTAACCCCTACACGCTACTCTTTTTGCGCGCAGTACCAAACGTGGACCTTCGCCGGACAAAATGGCACCAACGACAACAATCGAAACCGTCACCATCACGCGACCACTGAAGGTCATTGCGTTCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACCTCCACCGACTGGCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACGAGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCGCCTACATCAAGGCGACGGCGGCGCT] [+] EMBL BM595718 [CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACTGCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCCTAGCGAGCCGGTTCGGCAGAAGTGCAAGAAGGCAGCCGCCAGCCAAACACCGCAACAGCGGACAGTACGTTTCCCGCCCGCAGCTTAAGCTTCTCTTTAACCCCTACACGCTACTCTTTTTGCGCGCAGTACCAAACGTGGACCTTCGCCGGACAAAATGGCACCAACGACAACAATCGAAACCGTCACCATCACGCGACCACTGAAGGTCATTGCGTTCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACCTCCACCGACTGGCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACGAGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCGCCTACATCAAGGCGACGGCGGCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2476#0 ----CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAA 56 consensus_2476#1 CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCA 60 * * * * *** * * * ** * * ** * consensus_2476#0 CTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTA 116 consensus_2476#1 CCGTTCGCGCTTTTTAATGCTTCTCTG-ACGCTCTTGCCGTCCCGCTCCGTTACTGCTGG 119 * * * * * * * * ** * ** ** *** * consensus_2476#0 CGCGTCGTCCCGGCTCGTCCCGCT--TGGCCATCAAAC-ATTCATAAACTCATACAAACT 173 consensus_2476#1 CCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACT 179 * * ** * *** * * *** ** * * ** ** * * * ** *** consensus_2476#0 ----CACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATAC-CAGGTGCAGTGA 228 consensus_2476#1 GCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCC 239 ** ** * * * ** * ** * ** * ** consensus_2476#0 GAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAA 288 consensus_2476#1 TAGCGAGCCGGTTCGGCAGA-AGTG--CAAGAAGGCAGCCGCCAGC-CAAACACCG-CAA 294 ** *** * ** * * *** ** * *** ** * * ***** *** consensus_2476#0 CGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACC 348 consensus_2476#1 CAGCGGA--CAGTACGTTTCCCGCCCGCAGCTTAAGC---TTCTCTTTAACCCCTACACG 349 * ** * ** * * * * ** ** **** * *** * * * *** consensus_2476#0 CAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTG 408 consensus_2476#1 CTACTCTTTTTG--CGCGCAGTACCAAACG-TGGACCTTCGCCGGACAAAATGGCACCAA 406 * *** * * *** * **** ** ** *** * * * consensus_2476#0 CCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGC 468 consensus_2476#1 CGAC-AACAATCGAAACCG---TCACCATCAC----GCGACCACTGAAGGTCATTGC-GT 457 * *** ** *** ** * * * * ***** **** * * * ** * consensus_2476#0 CCATCCAC--CGTAGTGG--AACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTA 524 consensus_2476#1 TCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACC--TCCACCGACTG 515 **** **** * * * * * * ** *** **** * * * * consensus_2476#0 CGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGC 584 consensus_2476#1 -GCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACG 574 * * * ** **** * * * ** ** * *** * * * * * consensus_2476#0 GCTTTTTAATGCTTCTCTGAC-GCTCTTGCCGTCCCGCT-CCGTTACTGCTGGCCTGCCG 642 consensus_2476#1 AGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCG 634 * * * ** * ** *** ** *** * * ** * ** ** consensus_2476#0 CTGCTGCTGCTGCTGCTACTGTTGCTG 669 consensus_2476#1 CCTACATCAAGGCGACGGCGGC-GCT- 659 * ** * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||