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Anopheles gambiae
cluster # 2476 cluster # 2476       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2476#0 length = 669 sequences # 1  
consensus_2476#1 length = 659 sequences # 1  

consensusID : consensus_2476#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAACTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTACGCGTCGTCCCGGCTCGTCCCGCTTGGCCATCAAACATTCATAAACTCATACAAACTCACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATACCAGGTGCAGTGAGAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAACGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACCCAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTGCCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGCCCATCCACCGTAGTGGAACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTACGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTG]

[+] EMBL BM647891             [CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAACTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTACGCGTCGTCCCGGCTCGTCCCGCTTGGCCATCAAACATTCATAAACTCATACAAACTCACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATACCAGGTGCAGTGAGAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAACGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACCCAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTGCCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGCCCATCCACCGTAGTGGAACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTACGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTG]


>consensus_2476#0 CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAACTAA CTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTACGCG TCGTCCCGGCTCGTCCCGCTTGGCCATCAAACATTCATAAACTCATACAAACTCACACTA GCAAAAACCTTTTTTCCGGCACCAGCTGATGCATACCAGGTGCAGTGAGAGTGAGTGAAT GAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAACGCCGTATTCAT CGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACCCAACTGCTCACA GTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTGCCCTTAACCTTC TGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGCCCATCCACCGTA GTGGAACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTACGACAACGCCGACGAG CAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCT CTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTA CTGTTGCTG



consensusID : consensus_2476#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACTGCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCCTAGCGAGCCGGTTCGGCAGAAGTGCAAGAAGGCAGCCGCCAGCCAAACACCGCAACAGCGGACAGTACGTTTCCCGCCCGCAGCTTAAGCTTCTCTTTAACCCCTACACGCTACTCTTTTTGCGCGCAGTACCAAACGTGGACCTTCGCCGGACAAAATGGCACCAACGACAACAATCGAAACCGTCACCATCACGCGACCACTGAAGGTCATTGCGTTCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACCTCCACCGACTGGCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACGAGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCGCCTACATCAAGGCGACGGCGGCGCT]

[+] EMBL BM595718             [CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGCCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACTGCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCCTAGCGAGCCGGTTCGGCAGAAGTGCAAGAAGGCAGCCGCCAGCCAAACACCGCAACAGCGGACAGTACGTTTCCCGCCCGCAGCTTAAGCTTCTCTTTAACCCCTACACGCTACTCTTTTTGCGCGCAGTACCAAACGTGGACCTTCGCCGGACAAAATGGCACCAACGACAACAATCGAAACCGTCACCATCACGCGACCACTGAAGGTCATTGCGTTCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACCTCCACCGACTGGCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACGAGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCGCCTACATCAAGGCGACGGCGGCGCT]


>consensus_2476#1 CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCA CCGTTCGCGCTTTTTAATGCTTCTCTGACGCTCTTGCCGTCCCGCTCCGTTACTGCTGGC CTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACTG CTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCCT AGCGAGCCGGTTCGGCAGAAGTGCAAGAAGGCAGCCGCCAGCCAAACACCGCAACAGCGG ACAGTACGTTTCCCGCCCGCAGCTTAAGCTTCTCTTTAACCCCTACACGCTACTCTTTTT GCGCGCAGTACCAAACGTGGACCTTCGCCGGACAAAATGGCACCAACGACAACAATCGAA ACCGTCACCATCACGCGACCACTGAAGGTCATTGCGTTCATCTGTGGCGTAATTGTCATC ATTCTCATGATACTGGCCCTCACCTCCACCGACTGGCTGATGGCGGAGAGCTGGCGCCAG GGCCTGTTTGTGCACTGCATCGAGGAGGGGTACGAGCTGCCGCTACCGTTCAACCTGCAG GATCCGGCCGGCTGCTATCCAAGCCGCGATGTCGCCTACATCAAGGCGACGGCGGCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2476#0      ----CCGCTCCTTGTTGGAAAGATCGCTCTGGCGAAGAAGAAACAATAAAAAAAGAAAAA 56
consensus_2476#1      CCGCGGACGCGTGGGCGGACGCGTGGGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCA 60
                             * * * *  ***    * *     * **    *             * **  *

consensus_2476#0      CTAACTCCCCAGGTCCGTTCGTGTTTGCGTGTGTGTGTGTATGTGCGTGTGAACTAATTA 116
consensus_2476#1      CCGTTCGCGCTTTTTAATGCTTCTCTG-ACGCTCTTGCCGTCCCGCTCCGTTACTGCTGG 119
                      *      * *   *   * * * * **   *    **       **      ***  *  

consensus_2476#0      CGCGTCGTCCCGGCTCGTCCCGCT--TGGCCATCAAAC-ATTCATAAACTCATACAAACT 173
consensus_2476#1      CCTGCCGCTGCTGCTGCTGCTGCTACTGTTGCTGACACGATCCGTGCCACCGGACGGACT 179
                      *  * **   * ***  * * ***  **    * * ** ** * *     *  **  ***

consensus_2476#0      ----CACACTAGCAAAAACCTTTTTTCCGGCACCAGCTGATGCATAC-CAGGTGCAGTGA 228
consensus_2476#1      GCTCTGACCTCGCCTGAGTGAGTGAGCGGGTGTGTGGGTGTGTGTGTGCATGCGCTTCCC 239
                              ** **   *     *   * **     *    **  *   ** * **     

consensus_2476#0      GAGTGAGTGAATGAGGGAAACGGTGGTGAACTAATCAGTGTTCAATACCAGCACCGGCAA 288
consensus_2476#1      TAGCGAGCCGGTTCGGCAGA-AGTG--CAAGAAGGCAGCCGCCAGC-CAAACACCG-CAA 294
                       ** ***    *  ** * *  ***   **  *  ***    **   * * ***** ***

consensus_2476#0      CGCCGTATTCATCGCCATCCTCATCCACACGCCAAGCGCTTCCTCCTGCAGCGACGCACC 348
consensus_2476#1      CAGCGGA--CAGTACGTTTCCCGCCCGCAGCTTAAGC---TTCTCTTTAACCCCTACACG 349
                      *  ** *  **   *  * * *  ** **    ****   * *** *  * *    *** 

consensus_2476#0      CAACTGCTCACAGTCCGGCAACTCGGAACGGTGTGCCGCCGCTGTGTGTGCCTGTGTCTG 408
consensus_2476#1      CTACTCTTTTTG--CGCGCAGTACCAAACG-TGGACCTTCGCCGGACAAAATGGCACCAA 406
                      * ***  *      *  ***   *  **** **  **  *** *         *   *  

consensus_2476#0      CCCTTAACCTTCTGCTCCGCGCTCGCGACCGCAGAGGCGACGACTGGACGCCGCCGCCGC 468
consensus_2476#1      CGAC-AACAATCGAAACCG---TCACCATCAC----GCGACCACTGAAGGTCATTGC-GT 457
                      *    ***  **    ***   ** * * * *    ***** **** * * *   ** * 

consensus_2476#0      CCATCCAC--CGTAGTGG--AACGGTTTAGATGCACCGGCGACCACCGTGCTGCTGCGTA 524
consensus_2476#1      TCATCTGTGGCGTAATTGTCATCATTCTCATGATACTGGCCCTCACC--TCCACCGACTG 515
                       ****     **** * *  * *  * *      ** ***   ****   *  * *  * 

consensus_2476#0      CGACAACGCCGACGAGCAGCTCCGTGAGCGTGGCGTGCCGCTGGGACAACCACCGTTCGC 584
consensus_2476#1      -GCTGATGGCGGAGAGCTGGCGCCAGGGCCTGTTTGTGCACTGCATCGAGGAGGGGTACG 574
                       *   * * **  **** *   *  * ** **      * ***   * *  *  * *   

consensus_2476#0      GCTTTTTAATGCTTCTCTGAC-GCTCTTGCCGTCCCGCT-CCGTTACTGCTGGCCTGCCG 642
consensus_2476#1      AGCTGCCGCTACCGTTCAACCTGCAGGATCCGGCCGGCTGCTATCCAAGCCGCGATGTCG 634
                         *     * *   **   * **     *** ** *** *  *    ** *   ** **

consensus_2476#0      CTGCTGCTGCTGCTGCTACTGTTGCTG 669
consensus_2476#1      CCTACATCAAGGCGACGGCGGC-GCT- 659
                      *          **  *  * *  *** 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)