cluster # 2477

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Anopheles gambiae
cluster # 2477 cluster # 2477 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2477#0 length = 852 sequences # 1

consensus_2477#1 length = 811 sequences # 1

consensusID : consensus_2477#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 852
fasta sequence

                              [GAATTGCCCCGAGGNTTAAGGTGAAGGTGCTGCAGAATGCGTGCATTACTGTCGGTTTGTGTTTTGTTTTGCGTGCTGTCAGTGGAGTTAGCCTATGCCGGCGCACTCTCCAGCAGGGATGTTGACAATCACGAGTGGCACATAGCGGCGGACGAGAATGGCAACATGCGGCTGGTGTCCTACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGGGACACGCGCTTTCTGCTGTACACTGCCTCCAATCCGGAGGTACCGCATGTACTCCGGAACGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCCAACGCGCATGATCATTCACGGGTGGCTCGGTACGCAGGATTCCGAGATCAATCGGCTGACCCGATCGGCCTCTTCTTCGGCGGTAACTACAACGTGATCTACGTCGACTGGAGCGTTGGTTCGTTCGCGATGACGTTCTATCCGAACTCGCCGTCCAGCCTGGTGTACGCGGTCGCTGCGCGCGCTCCAACATGCTGGACTATCTCGCCCGATATGGTCAGTAAACAAGCGTGACCGTAGTGGTTGTGGGACACAGTCTGGGTGCTCACGTAGCTAGGTAACNGTAANCGACACAGGTGGCAACTCNGTGGTTGCCTATCCCTTACTATTTGTNCNGTGCACCCCGGGCCTGGCCATATCCTCATGCCGCGCGATGCCCCGGACNCGGCTCATGGCCTCGCACTNCGGCATTACACGTTCAGCATCAACTCCAACNAAGGGCCGGGGNTGNATGGGCTTCATNNAAACCCGANTCGNAGAGACTGACNCCAATCCCAACATGGGG]

[+] EMBL AL930529             [GAATTGCCCCGAGGNTTAAGGTGAAGGTGCTGCAGAATGCGTGCATTACTGTCGGTTTGTGTTTTGTTTTGCGTGCTGTCAGTGGAGTTAGCCTATGCCGGCGCACTCTCCAGCAGGGATGTTGACAATCACGAGTGGCACATAGCGGCGGACGAGAATGGCAACATGCGGCTGGTGTCCTACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGGGACACGCGCTTTCTGCTGTACACTGCCTCCAATCCGGAGGTACCGCATGTACTCCGGAACGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCCAACGCGCATGATCATTCACGGGTGGCTCGGTACGCAGGATTCCGAGATCAATCGGCTGACCCGATCGGCCTCTTCTTCGGCGGTAACTACAACGTGATCTACGTCGACTGGAGCGTTGGTTCGTTCGCGATGACGTTCTATCCGAACTCGCCGTCCAGCCTGGTGTACGCGGTCGCTGCGCGCGCTCCAACATGCTGGACTATCTCGCCCGATATGGTCAGTAAACAAGCGTGACCGTAGTGGTTGTGGGACACAGTCTGGGTGCTCACGTAGCTAGGTAACNGTAANCGACACAGGTGGCAACTCNGTGGTTGCCTATCCCTTACTATTTGTNCNGTGCACCCCGGGCCTGGCCATATCCTCATGCCGCGCGATGCCCCGGACNCGGCTCATGGCCTCGCACTNCGGCATTACACGTTCAGCATCAACTCCAACNAAGGGCCGGGGNTGNATGGGCTTCATNNAAACCCGANTCGNAGAGACTGACNCCAATCCCAACATGGGG]




>consensus_2477#0
GAATTGCCCCGAGGNTTAAGGTGAAGGTGCTGCAGAATGCGTGCATTACTGTCGGTTTGT
GTTTTGTTTTGCGTGCTGTCAGTGGAGTTAGCCTATGCCGGCGCACTCTCCAGCAGGGAT
GTTGACAATCACGAGTGGCACATAGCGGCGGACGAGAATGGCAACATGCGGCTGGTGTCC
TACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGG
GACACGCGCTTTCTGCTGTACACTGCCTCCAATCCGGAGGTACCGCATGTACTCCGGAAC
GGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCCAACGCGCATGATC
ATTCACGGGTGGCTCGGTACGCAGGATTCCGAGATCAATCGGCTGACCCGATCGGCCTCT
TCTTCGGCGGTAACTACAACGTGATCTACGTCGACTGGAGCGTTGGTTCGTTCGCGATGA
CGTTCTATCCGAACTCGCCGTCCAGCCTGGTGTACGCGGTCGCTGCGCGCGCTCCAACAT
GCTGGACTATCTCGCCCGATATGGTCAGTAAACAAGCGTGACCGTAGTGGTTGTGGGACA
CAGTCTGGGTGCTCACGTAGCTAGGTAACNGTAANCGACACAGGTGGCAACTCNGTGGTT
GCCTATCCCTTACTATTTGTNCNGTGCACCCCGGGCCTGGCCATATCCTCATGCCGCGCG
ATGCCCCGGACNCGGCTCATGGCCTCGCACTNCGGCATTACACGTTCAGCATCAACTCCA
ACNAAGGGCCGGGGNTGNATGGGCTTCATNNAAACCCGANTCGNAGAGACTGACNCCAAT
CCCAACATGGGG

consensusID : consensus_2477#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 811
fasta sequence

                              [CCCGAGGTTGNGGACGAGAATGGACATGCGNGCTGTGTCTACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGGGACACGCGCTTTCTGCTGTACACTGGCTCCAATCCGGAGGTACCTGCATGTACTCCGNGAACTGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCAACTGCTGCATGATCATTCACTGGGTGGCTCGGTACGCAGTGATTCCTGAGATCAATCTGGCTGACCCTGATCTGGCCCTCTTCTTCGGCGGTAACTACAACTGTGATCTACGTCGACTGTGAGCTGTTGGTATCGTTGGATGAGTTCTATCCGAACTCGCGTCAGCTGGTGTACGCTGGTCGCTTGCTGTGCCTGCTCCAACATTGCTTGGACTATCTCGCCCGATATTGGTCAGCTAAACAAGCGTGACGTAATGGCNATGTGGGACACCAGTCTGGGGTGCTCACGTTTGCTGGTAACGTANGAANAGCTGGCGAATCGGGGTGCTATCCCCTACTATTTGTCGGGGGCTTGNGGAACCCCCCGGGACCTTTTGGCCCAATTTTACCCTTTTCTTGGGCCCGGCGCGCAANCTGCTTTCCCCCCCGAAACAAAGAGGCAAATCTACAAATTNGGGACAGTCCCGGGACATTGCCCCTCAGACTTATAACACGGTCANCACANNACANTNCAANANTCTCCCNCACAACACCTGGNCAAGCAGNAGGACAGCAGGAATNACTCNGCACTCAGTCGAGCGCCACNGTACANATGAGNAAAAC]

[+] EMBL AL931211             [CCCGAGGTTGNGGACGAGAATGGACATGCGNGCTGTGTCTACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGGGACACGCGCTTTCTGCTGTACACTGGCTCCAATCCGGAGGTACCTGCATGTACTCCGNGAACTGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCAACTGCTGCATGATCATTCACTGGGTGGCTCGGTACGCAGTGATTCCTGAGATCAATCTGGCTGACCCTGATCTGGCCCTCTTCTTCGGCGGTAACTACAACTGTGATCTACGTCGACTGTGAGCTGTTGGTATCGTTGGATGAGTTCTATCCGAACTCGCGTCAGCTGGTGTACGCTGGTCGCTTGCTGTGCCTGCTCCAACATTGCTTGGACTATCTCGCCCGATATTGGTCAGCTAAACAAGCGTGACGTAATGGCNATGTGGGACACCAGTCTGGGGTGCTCACGTTTGCTGGTAACGTANGAANAGCTGGCGAATCGGGGTGCTATCCCCTACTATTTGTCGGGGGCTTGNGGAACCCCCCGGGACCTTTTGGCCCAATTTTACCCTTTTCTTGGGCCCGGCGCGCAANCTGCTTTCCCCCCCGAAACAAAGAGGCAAATCTACAAATTNGGGACAGTCCCGGGACATTGCCCCTCAGACTTATAACACGGTCANCACANNACANTNCAANANTCTCCCNCACAACACCTGGNCAAGCAGNAGGACAGCAGGAATNACTCNGCACTCAGTCGAGCGCCACNGTACANATGAGNAAAAC]




>consensus_2477#1
CCCGAGGTTGNGGACGAGAATGGACATGCGNGCTGTGTCTACGCCGTACCCTACCAGCTG
GACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGGGACACGCGCTTTCTGCTGTAC
ACTGGCTCCAATCCGGAGGTACCTGCATGTACTCCGNGAACTGGTGACATTGCCTCGATC
CAGAGCTCTCCCTTTAACCCGAACAACCAACTGCTGCATGATCATTCACTGGGTGGCTCG
GTACGCAGTGATTCCTGAGATCAATCTGGCTGACCCTGATCTGGCCCTCTTCTTCGGCGG
TAACTACAACTGTGATCTACGTCGACTGTGAGCTGTTGGTATCGTTGGATGAGTTCTATC
CGAACTCGCGTCAGCTGGTGTACGCTGGTCGCTTGCTGTGCCTGCTCCAACATTGCTTGG
ACTATCTCGCCCGATATTGGTCAGCTAAACAAGCGTGACGTAATGGCNATGTGGGACACC
AGTCTGGGGTGCTCACGTTTGCTGGTAACGTANGAANAGCTGGCGAATCGGGGTGCTATC
CCCTACTATTTGTCGGGGGCTTGNGGAACCCCCCGGGACCTTTTGGCCCAATTTTACCCT
TTTCTTGGGCCCGGCGCGCAANCTGCTTTCCCCCCCGAAACAAAGAGGCAAATCTACAAA
TTNGGGACAGTCCCGGGACATTGCCCCTCAGACTTATAACACGGTCANCACANNACANTN
CAANANTCTCCCNCACAACACCTGGNCAAGCAGNAGGACAGCAGGAATNACTCNGCACTC
AGTCGAGCGCCACNGTACANATGAGNAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2477#0      GAATTGCCCCGAGGNTTAAGGTGAAGGTGCTGCAGAATGCGTGCATTACTGTCGGTTTGT 60
consensus_2477#1      ------------------------------------------------------------
                                                                                  

consensus_2477#0      GTTTTGTTTTGCGTGCTGTCAGTGGAGTTAGCCTATGCCGGCGCACTCTCCAGCAGGGAT 120
consensus_2477#1      ------------------------------------------------------------
                                                                                  

consensus_2477#0      GTTGACAATCACGAGTGGCACATAGCGGCGGACGAGAATGGCAACATGCGGCTGGTGTCC 180
consensus_2477#1      ------------------CCCGAGGTTGNGGACGAGAATGG--ACATGCGNGCTGTGTC- 39
                                        * *   *  * ************  *******    ***** 

consensus_2477#0      TACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGG 240
consensus_2477#1      TACGCCGTACCCTACCAGCTGGACGGTGAAAAACCGAAGCGAGATTTTGTCCCAGAGCGG 99
                      ************************************************************

consensus_2477#0      GACACGCGCTTTCTGCTGTACACTGCCTCCAATCCGGAGGTACC-GCATGTACTCCGGAA 299
consensus_2477#1      GACACGCGCTTTCTGCTGTACACTGGCTCCAATCCGGAGGTACCTGCATGTACTCCGNGA 159
                      ************************* ****************** ************  *

consensus_2477#0      --CGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCCAACGC-GCAT 356
consensus_2477#1      ACTGGTGACATTGCCTCGATCCAGAGCTCTCCCTTTAACCCGAACAACCAACTGCTGCAT 219
                         ********************************************** *  ** ****

consensus_2477#0      GATCATTCAC-GGGTGGCTCGGTACGCAG-GATTCC-GAGATCAATC-GGCTGACCC-GA 411
consensus_2477#1      GATCATTCACTGGGTGGCTCGGTACGCAGTGATTCCTGAGATCAATCTGGCTGACCCTGA 279
                      ********** ****************** ****** ********** ********* **

consensus_2477#0      TCGG--CCTCTTCTTCGGCGGTAACTACAAC-GTGATCTACGTCGACTG-GAGC-GTTGG 466
consensus_2477#1      TCTGGCCCTCTTCTTCGGCGGTAACTACAACTGTGATCTACGTCGACTGTGAGCTGTTGG 339
                      ** *  ************************* ***************** **** *****

consensus_2477#0      TTCGTTCGCGATGACGTTCTATCCGAACTCGCCGTCCAGCCTGGTGTACGCGG-----TC 521
consensus_2477#1      TATCGTTG-GATGA-GTTCTATCCGAACTCGCG--TCAGC-TGGTGTACGCTGGTCGCTT 394
                      *    * * ***** *****************    **** ********** *     * 

consensus_2477#0      GCTGCGCGCGCTCCAACATG--CTGGACTATCTCGCCCGATAT-GGTCAG-TAAACAAGC 577
consensus_2477#1      GCTGTGCCTGCTCCAACATTGCTTGGACTATCTCGCCCGATATTGGTCAGCTAAACAAGC 454
                      **** **  **********    ******************** ****** *********

consensus_2477#0      GTGACCGTAGTGGTT--GTGGGACAC-AGTCTGGG-TGCTCACGTAGCTAGGTAACNGTA 633
consensus_2477#1      GTGAC-GTAATGGCNATGTGGGACACCAGTCTGGGGTGCTCACGTTTGCTGGTAACGTAN 513
                      ***** *** ***    ********* ******** *********     ******    

consensus_2477#0      ANCGACACAGGTGGCAACTCNGTGGTTGCCTATCCCTTACTATTTGTNCNGTGCACCCCG 693
consensus_2477#1      GA----ANAGCTGGCGAATCGG--GGTGC-TATCCCCTACTATTTGTCGGGGGCTTGNGG 566
                            * ** **** * ** *  * *** ****** **********   * **     *

consensus_2477#0      GGCCTGGCCATATCCTCATGCCGCGCGATGCCCC------GGACNCGGCTCATGGCCTCG 747
consensus_2477#1      AACCCCCCGGGACCTTTTGGCCCAATTTTACCCTTTTCTTGGGCCCGGCGCGCAANCT-G 625
                        **   *   * * *   ***      * ***       ** * **** *     ** *

consensus_2477#0      CACTNCGGCATTACACGTTCAGCATCAACTCCAACNAAGGGCCGGGGNTGNATGGGCTTC 807
consensus_2477#1      CTTTCCCCCCCGAAACAAAGAGGCAAATCTACAAATTNGGGACAGTCCCGGGACATTGCC 685
                      *  * *  *   * **    **    * ** ***    *** * *    *         *

consensus_2477#0      ATNNAAACCCGANTCGNAGAGACTGACNCCAATCCCAACATGGGG--------------- 852
consensus_2477#1      CCTCAGACTTATAACACGGTCANCACANNACANTNCAANANTCTCCCNCACAACACCTGG 745
                          * **      *   *  *     *   *   *** *                    

consensus_2477#0      ------------------------------------------------------------
consensus_2477#1      NCAAGCAGNAGGACAGCAGGAATNACTCNGCACTCAGTCGAGCGCCACNGTACANATGAG 805
                                                                                  

consensus_2477#0      ------
consensus_2477#1      NAAAAC 811