These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTTACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACGAGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGTTCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACGAGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTGTGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCA] [+] EMBL BM633011 [CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTTACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACGAGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGTTCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACGAGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTGTGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCA] consensusID : consensus_2478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCAACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGCAGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACCAGCCCCTGA] [+] EMBL BM583242 [CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATACCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCTGCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAACACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACCTCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCATAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGCTGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGCTGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCAACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGCAGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACCAGCCCCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2478#0 CCGCGGACGCGTGGGCGACGGCCACCACCATGCCGCCCCTAGCGGCGCAGCCCGACTGTT 60 consensus_2478#1 ------------------------------------------------------------ consensus_2478#0 ACTCGCTGGCCGCAACCAAGCTGCTGCCGAACTCACCGGAGAGTGCCACGTTGTACGACG 120 consensus_2478#1 ------------------------------------------------------------ consensus_2478#0 AGCGGTCGCTGATCTCGCCCGAGCCCACGTTTGGCTCGTTCACGGAAGGCACGCCCCTGT 180 consensus_2478#1 ------------------------------------------------------------ consensus_2478#0 TCATCCGCACGCCCGACCACAGCGTGTTCGCGGTGGACGAAAGCAGCCACTTTGAGCACG 240 consensus_2478#1 ------------------------------------------------------------ consensus_2478#0 AGGCCAAGGGCTTCCGGTACGCGCACGGCGCTACGCCCGATCTCACCGGGGGAGACAGTG 300 consensus_2478#1 ------------------------------------------------------------ consensus_2478#0 TGGGGAGCCCGCTAGGCCACACCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATA 360 consensus_2478#1 -------CCGCCCACGCGTCCGCAACCACACCACCTGCTCGACCGCCTCCGCCACCAATA 53 ** * * ** * ************************************** consensus_2478#0 CCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCT 420 consensus_2478#1 CCACCTCCAGCAGTCCGGCGACCACGGTCACGGTGCATCACGGTGCGCACGTGCCGTCCT 113 ************************************************************ consensus_2478#0 GCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAAC 480 consensus_2478#1 GCAACAGTCCCCTTCCGCAACAGCACCACAATCAACACCAGCAACACAATCAGCAGCAAC 173 ************************************************************ consensus_2478#0 ACAACAACA------------ACAACAACAACAACAGTCTTCAGATCAACAACAATCACC 528 consensus_2478#1 ACAACAACACCAACAACAACAACAACAACAACAACAGTCTTCAGATCAACAACAATCACC 233 ********* *************************************** consensus_2478#0 TCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCA 588 consensus_2478#1 TCCAGCAGCAAACGACGCCGTCCGCCAAGTCCGTCTACGCCGACAGCGACGGTGACTGCA 293 ************************************************************ consensus_2478#0 TAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGC 648 consensus_2478#1 TAAAGACGGAGAAGTACTACGATGACGATGAGTGTCAGAGTGACCACTTTGGCAGCATGC 353 ************************************************************ consensus_2478#0 TGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGC 708 consensus_2478#1 TGGATCTGGAGCCCGGTGTGTGTTTCAGCGACATTGAGCCCTTCAACGGGCATTTCACGC 413 ************************************************************ consensus_2478#0 TGGCTGAGCCGCAGCACCAGCAGCA----------------------------------- 733 consensus_2478#1 TGGCTGAGCCGCAGCACCAGCAGCACCAACAGCAGCAGCAGCACCCACAGCAGCAACAGC 473 ************************* consensus_2478#0 ------------------------------------------------------------ consensus_2478#1 AACAGCAGCAGCAGCAGCAGCCACAACAGCAGCAGCAATCACAACAGTCACACCACCTCA 533 consensus_2478#0 ------------------------------------------------------------ consensus_2478#1 ACCAGCAACAGCAGCAGCGGGGCGCACTAGCGAGCTTTAACGAAATCACCAACGGACAGC 593 consensus_2478#0 ------------------------------------------------------------ consensus_2478#1 AGTGCCACCAGCCATTGCAGCAGCAGTTGCTGCAACCGTTCCAGTACTCCGAGGCAAACC 653 consensus_2478#0 --------- consensus_2478#1 AGCCCCTGA 662 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||