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Anopheles gambiae
cluster # 2479 cluster # 2479       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2479#0 length = 681 sequences # 1  
consensus_2479#1 length = 85 sequences # 1  

consensusID : consensus_2479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence
                              [GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTCGGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACACACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAATGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAATGAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCAGAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCATTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTACGAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACACTGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCACCTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTAACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCGGATGCCTGGGGATATCTGCTC]

[+] EMBL AL930541             [GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTCGGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACACACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAATGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAATGAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCAGAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCATTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTACGAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACACTGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCACCTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTAACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCGGATGCCTGGGGATATCTGCTC]


>consensus_2479#0 GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTC GGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACAC ACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAA TGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAAT GAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCA GAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCA TTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTAC GAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACAC TGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCAC CTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTA ACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCG GATGCCTGGGGATATCTGCTC



consensusID : consensus_2479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence
                              [CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATGAT]

[+] EMBL BM592295             [CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATGAT]


>consensus_2479#1 CCGGGATTAGGAGAGGAGGGAGTATGGCCATGGTGGCGAACACATCACACCGAGCAAGCA TATATGCACTGGATGATGGGATGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2479#0      GAATCCCCGAGGTTAAACAGACATGCAAGTAAGCTAGCAGTAAAACGCTAAACGTTTCTC 60
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GGTTCTGTTGTGATTCTGAAATTATTTGTGTACGCTTTTCTTACAAGCTCTCACATACAC 120
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      ACACTCCATTTCACTACTTGAGGCCACCGAAGCGAAGGCAATTTTAAACATCCTTTTCAA 180
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      TGCCCTAGCACTGTTTCACGCCAGGGCGTGAATATTTCACCTGCAGAGAGGGACTGAAAT 240
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GAGCGGAAGAGGTGCAAGGATGTGCAATGGGAAGGGGAAGAAGTGCAGGAGGATTAGGCA 300
consensus_2479#1      --------------------------------CCGGGATTAGGAGAGGAGGGAGTATG-- 26
                                                        ****  * * *  *  *** ** *  

consensus_2479#0      GAGGAGGGTGGCGAACACATCACACCGTGCAAGCATATATGCACTGGATGATGGGATGCA 360
consensus_2479#1      -GCCATGGTGGCGAACACATCACACCGAGCAAGCATATATGCACTGGATGATGGGATG-A 84
                          * ********************* ****************************** *

consensus_2479#0      TTCGGCATGNGNTGGNTNATGGATGAACGGTGATCGNAGAAAGCCAAAGCAAAAGTTTAC 420
consensus_2479#1      T----------------------------------------------------------- 85
                      *                                                           

consensus_2479#0      GAACATGTTATCTAGGTTAAGTTTCGGCTACAAACAAAGAAATTACTCTTAGCGTAACAC 480
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      TGACTTCNAACANATTCNNGTCAACATNNGACTATACTTAAACACACAGTCGTACACCAC 540
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      CTACATATTACCACACATACNGACCCTACACAAACACGTACACACACACACACACACCTA 600
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      ACACGGCTGCANCAATGCGGACNGAAGCACAGGTGACNCGAAACCACCGGGAGCCACTCG 660
consensus_2479#1      ------------------------------------------------------------
                                                                                  

consensus_2479#0      GATGCCTGGGGATATCTGCTC 681
consensus_2479#1      ---------------------
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)