These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence [GGCCAAGAATCGGCACGNGGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACCAACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCAAATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGACTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAAAAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAAAGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCCTACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAANGAGNTCAGNCACGCGGNCT] [+] EMBL BX467174 [GGCCAAGAATCGGCACGNGGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACCAACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCAAATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGACTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAAAAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAAAGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCCTACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAANGAGNTCAGNCACGCGGNCT] consensusID : consensus_2482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATGGTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGG] [+] EMBL BM595706 [CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATGGTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTATCTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACGGTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTCTCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAACGAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTTCTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAATCCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAGCCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACGACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAATCAGCTGGAACGGACAGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2482#0 ------------------------------------------------------------ consensus_2482#1 CCGGCGGTGGTGAAGCATATCCTGGACCAGCTGCTGACGCCGTACGTGGCGGGCAAGATG 60 consensus_2482#0 -----GGCCAAGAATCGGCACGNG--GAAGATGCTGAACTCGAACACGCGCAACCCGTAT 53 consensus_2482#1 GTGACGGACAGCGAGCAGCACGTGCTGAAGATGCTGAACTCGAACACGCGCAACCCGTAT 120 ** ** * * ***** * ********************************** consensus_2482#0 CTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACG 113 consensus_2482#1 CTGATATGGGACAATGGGACGCGGGCCCAGCTGACGGACTTTCTCGAGCATCAGCGCACG 180 ************************************************************ consensus_2482#0 GTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTC 173 consensus_2482#1 GTCGCGTCGAAGGAGCAGTACGAAGACGTGTCGGAAATACACGAGCTGGTGCAAGGTTTC 240 ************************************************************ consensus_2482#0 TCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAAC 233 consensus_2482#1 TCGTACGATGCGCATCGCGACGAGCTTAAGATTGGTGGAATTTTCATCCGCGTGTACAAC 300 ************************************************************ consensus_2482#0 GAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTT 293 consensus_2482#1 GAAATGCCCACGTTTCCGATAACGAACCCGAAAAGTTTCGTGATCGATCTGCTCGAGTTT 360 ************************************************************ consensus_2482#0 CTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAAT 353 consensus_2482#1 CTCAAGCAGGGCTACAATCACCTGCACGGAACGGCAGCTCCATCGAACGCAAGTGCCAAT 420 ************************************************************ consensus_2482#0 CCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAG 413 consensus_2482#1 CCGGTTCCCGCCAGCCAAGCGCTAACTGGTGGCATCTTGGTCCCTACGAAAGCGTGGAAG 480 ************************************************************ consensus_2482#0 CCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACG 473 consensus_2482#1 CCGATGGTACCGGCACCTCCTCCGAAGCGTCCGGCCGGTTTGCAATCGCCGGCCGCAACG 540 ************************************************************ consensus_2482#0 ACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAAT 533 consensus_2482#1 ACCCCCGGCAGCGACATCAGTGCAGTGCTGAGCGAGTACGCCCGCTCGAAGCAGCGCAAT 600 ************************************************************ consensus_2482#0 CAGCTGGAACGGACAGCCGGCAGTGTCGATGGTGGTTCCGCGCAGCGGTACGATTTCACC 593 consensus_2482#1 CAGCTGGAACGGACAGCCGG---------------------------------------- 620 ******************** consensus_2482#0 AACAATCCGCACGCCGTCCGGCACCTGCTGATGGCACTGCAGGCCTCATCTCCGTGATCA 653 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 AATCGAACACCAACGTCGAAAATGCAGTGAATCGGAACACTTTGAAATTGCTGTTCGGGA 713 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 CTGCGTCCTCGAAACAAGCCGAGNTGCGGATCCGGACCAATTTCGGCAACCGAATCCAAA 773 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 AAACCGCTAAGGCCGGCTCCGAAAGGTCCGTCCTGGNACTAGGTGGTTCGCGCCAACCAA 833 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 AGGGGAGGTTGCGTTGACCCGAGATTAAGCGGGCCTGGCGAAGAAATCTGTGGGGCCGCC 893 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 TACATTGANNCNAGTGTCGAGAANGGGTCCCGGAACTGCGCGANCTTTTTTAAACAAAAA 953 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 NGAGNTCAGNCACGCGGNCT 973 consensus_2482#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||