These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTACAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGTTATACAAAAAATAAACCCCTAAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGGAGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCGTGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACGGTGGCACGGTGGAAAACAGCGGCACC] [+] EMBL BM595613 [CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTACAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGTTATACAAAAAATAAACCCCTAAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGGAGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCGTGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACGGTGGCACGGTGGAAAACAGCGGCACC] consensusID : consensus_2488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAAGGTACAAATACACACACGCAAGAAGAAAAGTGCACAAGTGTGTGAACGTGTGTGAGTGTTGTTAAATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTAAAGAAAGTCGGTGAAAGATAGTACAAGTGATACGAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT] [+] EMBL BM643243 [CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTACTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAAGGTACAAATACACACACGCAAGAAGAAAAGTGCACAAGTGTGTGAACGTGTGTGAGTGTTGTTAAATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATAAAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGTTAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGTGATTAAAGAAAGTCGGTGAAAGATAGTACAAGTGATACGAGAACCCCCCGGGACAAGACGCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2488#0 CCGCTCCCAGGAGCATTAAAAGGGCATTAGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTA 60 consensus_2488#1 ----------------CCGCGCTGAGTCGGTTGTGTGTGCGCTTGTTCGGCGGTCGCTTA 44 * * ******************************* consensus_2488#0 CTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTTAAAGGTA 120 consensus_2488#1 CTCCCGTGAAGTGTCACTTGGCCAAGAGAGAAGTTAAAAGCGGAAAGTTTTTCAA-GGTA 103 **************************************************** ** **** consensus_2488#0 CAAATACACACACGCAAGAAAAAAAGTGCACAAGAGTGTGTGGACGTGTGTGAGTGTTGT 180 consensus_2488#1 CAAATACACACACGCAAGAAGAAAAGTGCACAAG--TGTGTGAACGTGTGTGAGTGTTGT 161 ******************** ************* ****** ***************** consensus_2488#0 TATACAAAAAATAAACCCCTAA--GATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATA 238 consensus_2488#1 TA-------AATAAACGCCTAATAGATAGAAAAGTGCCTTAGAAAAGTGTATTCGGAATA 214 ** ******* ***** ************************************ consensus_2488#0 AAAGCACGTGCGCACGCCCTTTTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGT 298 consensus_2488#1 AAAGCACGTGCGCGCGCCCTATTGGTTTGCATGTAAACAATGCCGATAAACCGTTGTTGT 274 ************* ****** *************************************** consensus_2488#0 TAATACGATTAAAAGACCGTCAGTAGTGTATGTGTGTGAGTGCGCGCCAGTTGTGAATGT 358 consensus_2488#1 TAATACGATTAAAAGACCGACAGTAGTGTGTGTGTGTGAGTGCGCGCCAGTTGTGAATGT 334 ******************* ********* ****************************** consensus_2488#0 GATTGAAGAAAGTCGGTGAAAAGATAGTACAAGTGATACAAGAACCCCCCGGGACAAGAC 418 consensus_2488#1 GATTAAAGAAAGTCGGTGAAA-GATAGTACAAGTGATACGAGAACCCCCCGGGACAAGAC 393 **** **************** ***************** ******************** consensus_2488#0 GCTTGTGCCCGCCAACCAACCTCCCCCGGTCTATTGGTTAGTGTTCGTGGTGTTCTGTGG 478 consensus_2488#1 GCTTGTGCCCGCCAACCAACCTCCCCCGGTCTAT-------------------------- 427 ********************************** consensus_2488#0 AGAGTCGCCGAGTTCATCTCGCCCAAGAGGCACACACACGCCCACGGACTCACAGTCCCG 538 consensus_2488#1 ------------------------------------------------------------ consensus_2488#0 TGACAACAAGTCGTCGAATGAATCAATTGCACCACAACCATCACATCATGAGCACGTACG 598 consensus_2488#1 ------------------------------------------------------------ consensus_2488#0 GTGGCACGGTGGAAAACAGCGGCACC 624 consensus_2488#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||