These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA] [+] EMBL BM620341 [CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA] consensusID : consensus_2494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG] [+] EMBL BM595432 [CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2494#0 ------------------------------------------------------------ consensus_2494#1 CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGG 60 consensus_2494#0 ---------------------------------------CCGTTAACCGGGGGTAGCCCC 21 consensus_2494#1 TTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCG 120 * ********* ******** consensus_2494#0 GAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTA 81 consensus_2494#1 GAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTG 180 *************** ***** ***** *** ****** ******************** consensus_2494#0 CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 141 consensus_2494#1 CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 240 ************************************************************ consensus_2494#0 TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGG 201 consensus_2494#1 TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGG 300 ********************************************** ************* consensus_2494#0 TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 261 consensus_2494#1 TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 360 ************************************************************ consensus_2494#0 TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 321 consensus_2494#1 TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 420 ************************************************************ consensus_2494#0 TATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACA- 380 consensus_2494#1 TATAGAAATACT------------TGGAGTTGGGTAGAGCTGATGAACACACACACACAC 468 *********** *********************************** consensus_2494#0 -GGACACTGTAAAAA-TGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTG 438 consensus_2494#1 AGGACACTGTAAAAAATGCTTG-------------------------------------- 490 ************** ****** consensus_2494#0 CCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAA 498 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 AACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATA 558 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 GTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGAT 618 consensus_2494#1 ------------------------------------------------------------ consensus_2494#0 AAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA 663 consensus_2494#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||