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Anopheles gambiae
cluster # 2494 cluster # 2494       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2494#0 length = 663 sequences # 1  
consensus_2494#1 length = 490 sequences # 1  

consensusID : consensus_2494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence
                              [CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA]

[+] EMBL BM620341             [CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA]


>consensus_2494#0 CCGTTAACCGGGGGTAGCCCCGAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTT GACTGTTACGGTTGCGTGGTACAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCC CGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTG ATCATCAGAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACA GTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAA AAATCAAATGACTGAGATTTATATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAG CTGATGAACACACACACACAGGACACTGTAAAAATGCTTGCAATTGAATGAGTATGGTAT GAAAGTGTTGTGTGAGTGCCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAA AGCATGAAAGTAGGAAAAAACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTT CAGTTACTGATAGAAATAGTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAG GAAAGAGCATTTTCGGATAAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAA ACA



consensusID : consensus_2494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence
                              [CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG]

[+] EMBL BM595432             [CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGGTTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCGGAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTGCAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAATGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGGTTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACACTGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTATATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAAAAAATGCTTG]


>consensus_2494#1 CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGG TTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCG GAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTG CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGG TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA TATAGAAATACTTGGAGTTGGGTAGAGCTGATGAACACACACACACACAGGACACTGTAA AAAATGCTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2494#0      ------------------------------------------------------------
consensus_2494#1      CCGGTCCATACGGGGCTTGAACCCATGATGAGCATGTTGTTAACAGTACCACAGGGCCGG 60
                                                                                  

consensus_2494#0      ---------------------------------------CCGTTAACCGGGGGTAGCCCC 21
consensus_2494#1      TTACATTGATTACTCCCAGCATTTTTATACTTTTTTTCTCGGTTAACCGGTGGTAGCCCG 120
                                                             * ********* ******** 

consensus_2494#0      GAGATCAATTTGACGTACGTGGCAGCTTCTAGAAGGTTTGACTGTTACGGTTGCGTGGTA 81
consensus_2494#1      GAGATCAATTTGACGGACGTGTCAGCTCCTACAAGGTTGGACTGTTACGGTTGCGTGGTG 180
                      *************** ***** ***** *** ****** ******************** 

consensus_2494#0      CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 141
consensus_2494#1      CAAATAAGTCTAGCAAGCCTGTTTAGGCCGGTATGAGCCCGCAGGTCGTTACGACATGAA 240
                      ************************************************************

consensus_2494#0      TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAGAAGCTTTGAATGG 201
consensus_2494#1      TGATCGTTTCGGTTCAGCATGTTTCTTTTCACACTGCTGATCATCAAAAGCTTTGAATGG 300
                      ********************************************** *************

consensus_2494#0      TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 261
consensus_2494#1      TTGATTGCGTTTATTGATTGTGTTTCAATCCAGCAAACAGTTTAGGTAAAAATCAAACAC 360
                      ************************************************************

consensus_2494#0      TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 321
consensus_2494#1      TGTAGAATATACACATGTCTGTACACCCCTTGCATACAAAAATCAAATGACTGAGATTTA 420
                      ************************************************************

consensus_2494#0      TATAGAAATACAAGGAGCAAAACATGGAGTTGGGTAGAGCTGATGAACACACACACACA- 380
consensus_2494#1      TATAGAAATACT------------TGGAGTTGGGTAGAGCTGATGAACACACACACACAC 468
                      ***********             *********************************** 

consensus_2494#0      -GGACACTGTAAAAA-TGCTTGCAATTGAATGAGTATGGTATGAAAGTGTTGTGTGAGTG 438
consensus_2494#1      AGGACACTGTAAAAAATGCTTG-------------------------------------- 490
                       ************** ******                                      

consensus_2494#0      CCTGTGCATTAATCTTTTTCTACACCAGTACGAATGAATGAAAGCATGAAAGTAGGAAAA 498
consensus_2494#1      ------------------------------------------------------------
                                                                                  

consensus_2494#0      AACACGTGCATGTGATTTGGAAGCAGCTTTGGATAGCTTTTTCAGTTACTGATAGAAATA 558
consensus_2494#1      ------------------------------------------------------------
                                                                                  

consensus_2494#0      GTGAATGATAGGATATAGTGAAGTTTGCATCCAATTACCAAGGAAAGAGCATTTTCGGAT 618
consensus_2494#1      ------------------------------------------------------------
                                                                                  

consensus_2494#0      AAATTCAAGCAAGTAAGAAATGAGAAACAAATGTAGAGCCAAACA 663
consensus_2494#1      ---------------------------------------------
                                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)