These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2496#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCCCATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATTTATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTACAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATTCGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAAGGTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGTAATGGCTGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAGTAACCTGAACGAGTGAATAGTGTATACGAAAATAAACGAACCACCTTGATCATATGCGATCG] [+] EMBL BX623771 [ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCCCATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATTTATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTACAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATTCGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAAGGTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGTAATGGCTGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAGTAACCTGAACGAGTGAATAGTGTATACGAAAATAAACGAACCACCTTGATCATATGCGATCG] consensusID : consensus_2496#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [ATCGCCCCGAGGTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTGAATAGTGTATACGAACAAATAAAACGAACCACCTTGATC] [+] EMBL AL930682 [ATCGCCCCGAGGTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGTAGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGTGTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACGCGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGTGTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTTCACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTGAATAGTGTATACGAACAAATAAAACGAACCACCTTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2496#0 ATACAACCAACCATAAATAGCCTAGATACAGGAAGCGTGATATTTAAGCAGCATAGTTCC 60 consensus_2496#1 ------------------------------------------------------------ consensus_2496#0 CATACCACCATTCCACCAACGTACCAACATGGCCATCGATCAGGATCAGCGGAATAGATT 120 consensus_2496#1 ------------------------------------------------------------ consensus_2496#0 TATGTTTATGACTAAACTTGATTGTAATGTTCGAGCTCTGCTGGTAAGCGAAACGAGGTA 180 consensus_2496#1 ------------------------------------------------------------ consensus_2496#0 CAAGATTTCGACGATCGGTTTGCCATGTTTGGTAGGCAGCATAGCATTAGATTTTGTATT 240 consensus_2496#1 ------------------------------------------------------------ consensus_2496#0 CGTTTTGCCATAACACACCGTTTTAAAAAGTGTGCACAAGACACGAGTTATACAACCGAA 300 consensus_2496#1 -------------------------------------------------ATCGCCCCGAG 11 ** **** consensus_2496#0 G--GTAAACCGCAGGGTTTGCGAAGCCCACGTAGGCTTCTGT----AATGGCTGG-ATGT 353 consensus_2496#1 GTTNTAAACCGCAGGGGTTGCGAAGCCCACGTAGGCTTTCCTGGTAAATGGCTGGGATGT 71 * ************ ********************* * ********* **** consensus_2496#0 AGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGT 413 consensus_2496#1 AGGAGAGAAAATTCGGTTGATTTTTTTTTTCAAAACTTGATTTTAATTTATTTACTGTGT 131 ************************************************************ consensus_2496#0 GTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACG 473 consensus_2496#1 GTTAGCAGGCACACGGTTTACTCTAGTGTGAAAAAGGACCAGTTTAGTGTGACCACGACG 191 ************************************************************ consensus_2496#0 CGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGT 533 consensus_2496#1 CGTTAATTGATTAGTAGATACGTTTAGATAGTGCTCAATTCTACATAGGATAGGATGAGT 251 ************************************************************ consensus_2496#0 GTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTT 593 consensus_2496#1 GTAGGACTTAGTACGAGCCTGTAGTACGTGGTCAGTACTTCGAACGAAATCGGATCGCTT 311 ************************************************************ consensus_2496#0 CACTCGATGGTACACTTCGAGACGCTATACGAAG---TAA--CCTGAACGA------GTG 642 consensus_2496#1 CACTCGATGGTACACTTCGAGACGCTATACGAAAGGTTAAACCCTGGAAAACCGGAGGTG 371 ********************************* *** **** * * *** consensus_2496#0 AATAGTGTATACGAA--AATAAA-CGAACCACCTTGATCATATGCGATCG 689 consensus_2496#1 AATAGTGTATACGAACAAATAAAACGAACCACCTTGATC----------- 410 *************** ****** *************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||