These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAAAAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACCTCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTCCTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAACGTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCCATAGTAAGCAACGCACTGCCGGTCGATCAGCCGGCCACGAACGATTCCGGTCGGGTTGAAGCGGCCACAGCACGGCCCACCACCGTCGGCAGCGGCAATGAGCAGCGCTGCGGCCGACGGCAACATTCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGGCGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTACCACTGTGGAGGGGCGCTCCTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA] [+] EMBL BM646908 [CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAAAAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACCTCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTCCTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAACGTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCCATAGTAAGCAACGCACTGCCGGTCGATCAGCCGGCCACGAACGATTCCGGTCGGGTTGAAGCGGCCACAGCACGGCCCACCACCGTCGGCAGCGGCAATGAGCAGCGCTGCGGCCGACGGCAACATTCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGGCGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTACCACTGTGGAGGGGCGCTCCTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA] consensusID : consensus_2498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [AGGCCAGGAATTCCGCCCCGAGTGTTTTTCGAGCCCATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCGGGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTGCTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGGCTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACAGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTCCTCAACAAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCAACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTGTTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGGAACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG] [+] EMBL AL930746 [AGGCCAGGAATTCCGCCCCGAGTGTTTTTCGAGCCCATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCGGGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTGCTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGGCTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGGTGGCCATCCACAGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTCCTCAACAAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACGCTTGCACCCGAATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCAACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTGTTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGGAACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2498#0 CCGGGACTTTGCGGTGCGGAAAGTGTTTGCTGCCGTCGGTCGCAAATTATCGCTCCCGAA 60 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 AAAACCACCACCACCTCAACAACAACAGCACCAGCGACCGTCTTCAGTACCGGGGTGACC 120 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 TCCACCAAGCTAGAGCCGGTTGATGGGCTAATTTTCGACTCAGATCCCATTCTGCCTGTC 180 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 CTGCCCGCCTCCGTACCGTTTCAACCGATCCCGCTGAACGAAAGCAACTATGATCCGAAC 240 consensus_2498#1 ------------------------------------------------------------ consensus_2498#0 GTGCTTGCCGAGCTGTCCAATCTGCTTCTGAGCCACAGTCTGGCCGATACGTTCGAGCCC 300 consensus_2498#1 ----------------------AGGCCAGGAATTCCGCCCCGAGTGTTT--TTCGAGCCC 36 * ** * * * * * ********* consensus_2498#0 AT--AGTAAGCAAC-GCACTGCCGGTCGATC-AGCCGG--CCACGAACGATTCC-GGTCG 353 consensus_2498#1 ATCTGGTAAGCAACTGCACTGCTGGTCGATCTAGCCTGTGCCACGAACGATTCCTGGTCG 96 ** ********* ******* ******** **** * ************** ***** consensus_2498#0 GGTTGAAGC-GGCCACAGCACGGCCCACCACCGTCGGCAGC-GGCAATGAGCAGC----G 407 consensus_2498#1 GGTTGAAGCTGGCCACAGCACTGGCCACACCTGTCGGCAGCTGGCAATGAGCAGCTGCTG 156 ********* *********** * **** * ********* ************* * consensus_2498#0 CTGCGGCCGAC-GGCAACATTCC-GTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACGG- 464 consensus_2498#1 CTGTGCCTGACTGGCAACATTCCCGTCAGCAGTCGCATCTTCTTCCAGGAGGAGGACTGG 216 *** * * *** *********** ********************************* * consensus_2498#0 -CGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGG 523 consensus_2498#1 CTGACGGTATCAGTCAGGCCGTGGCCGGACCGGTCGGATTCAGCGAGTTCCCCTGGACGG 276 ********************************************************** consensus_2498#0 TGGCCATCCACCAGCTCATCCGGAACGGTTCGTACGTGTA-CCACTGTGGAGGGGCGCTC 582 consensus_2498#1 TGGCCATCCAC-AGCTCATCCGGAACGGTTCGTACGTGTNACCACTGTGGACGGGCGCTC 335 *********** *************************** ********** ******** consensus_2498#0 CTCAACCGAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAACCGCTTGCACCCG 642 consensus_2498#1 CTCAAC-AAAGCGTCGTCGTGACAGCGGCTCACTGTGTATCGAACAAC-GCTTGCACCCG 393 ****** **************************************** *********** consensus_2498#0 AATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACACAGGA---------- 692 consensus_2498#1 AATCGGTTCGTTGTGTACGCTGGCGACTGGGACCGGCGACACACGCAGGAACGGCTGGCA 453 ******************************************** ***** consensus_2498#0 ------------------------------------------------------------ consensus_2498#1 ACCAGGGAGCGAACCGTCAGTAGGGTCCTGGTACAACCGAACTACTACTCCGGCGCACTG 513 consensus_2498#0 ------------------------------------------------------------ consensus_2498#1 TTCAACGACCTCGCGCTACTGTCTTCAGCGAACCGTTCAACGACACGGTAGCGAACGTGG 573 consensus_2498#0 ------------------------------------------------------- consensus_2498#1 AACCGGTGTGTCTGAGCAGCCCTCTGGCACGGACTACATTCCCCCGGACAACTGG 628 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||