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Anopheles gambiae
cluster # 2499 cluster # 2499       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2499#0 length = 1482 sequences # 1  
consensus_2499#1 length = 715 sequences # 1  

consensusID : consensus_2499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1482
fasta sequence
                              [CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGTCCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATATATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAACTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACNGGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTCCCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAAACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGCGGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAGGTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGGGGCCAATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTGATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCGTTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGGGCCTTTATGGGCGCTTCATGGGAGGGTTATTACCCCCCTTTTTGTCCCAAATTTTGGGAACTTTTTCCCAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTTCACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGCTGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAAATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAACAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAATAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGCACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGTGTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCACACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACAGAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCAGAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGTGCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA]

[+] EMBL AL930753             [CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGTCCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATATATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAACTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACNGGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTCCCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAAACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGCGGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAGGTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGGGGCCAATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTGATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCGTTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGGGCCTTTATGGGCGCTTCATGGGAGGGTTATTACCCCCCTTTTTGTCCCAAATTTTGGGAACTTTTTCCCAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTTCACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGCTGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAAATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAACAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAATAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGCACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGTGTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCACACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACAGAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCAGAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGTGCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA]


>consensus_2499#0 CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGT CCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATAT ATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAA CTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACN GGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTC CCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAA ACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGC GGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAG GTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGG GGCCAATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTGA TTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCGT TGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGGG CCTTTATGGGCGCTTCATGGGAGGGTTATTACCCCCCTTTTTGTCCCAAATTTTGGGAAC TTTTTCCCAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTTCAC AACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGCTGG GGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAAATA AGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAACAA NACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAATAA GCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGCACA ACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGTGTA CCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCACAC CTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACAGAG GAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCAGAA AACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGTGCA CCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA



consensusID : consensus_2499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence
                              [CCGTTAAAAAGTATCTTTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGGGTGTTTACAACTATCCTTCATGAACACAAAAACACAACGAAACATCGCAGACGGAGTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTCATCGCGCGAAGTACGCAAAATAGTCCACCAGTCCATCACTACACCGTCCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCTTTTGTTGGTTAGGGATTAGTTTTAGATCGCATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTTGTTGTTCAAACAAAACCCGGAAAGTCGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTTGTGTCCGTGGGAGTACTATTCCGATCAGTTTTTCCACACTGTCACACTGTCAGATGGAAATACGAAATGTTGGTATCTTACTTCCCCGAGTTCGAACGATGAGTGAAGCTACGCATCGGACATTTTACGCTAGTGTTACAGTTAATGCTTTGCGCGTTCAAAATCGTTATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGAGATCAACCCTAACACAGACAGTTAAATCATTCACTACCACACCCCAAGGAGGATTAATATCCGCCGGACAGTATTTATTAGTAAAGGGTAGCGCAACACC]

[+] EMBL BM631724             [CCGTTAAAAAGTATCTTTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGGGTGTTTACAACTATCCTTCATGAACACAAAAACACAACGAAACATCGCAGACGGAGTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTCATCGCGCGAAGTACGCAAAATAGTCCACCAGTCCATCACTACACCGTCCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCTTTTGTTGGTTAGGGATTAGTTTTAGATCGCATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTTGTTGTTCAAACAAAACCCGGAAAGTCGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTTGTGTCCGTGGGAGTACTATTCCGATCAGTTTTTCCACACTGTCACACTGTCAGATGGAAATACGAAATGTTGGTATCTTACTTCCCCGAGTTCGAACGATGAGTGAAGCTACGCATCGGACATTTTACGCTAGTGTTACAGTTAATGCTTTGCGCGTTCAAAATCGTTATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGAGATCAACCCTAACACAGACAGTTAAATCATTCACTACCACACCCCAAGGAGGATTAATATCCGCCGGACAGTATTTATTAGTAAAGGGTAGCGCAACACC]


>consensus_2499#1 CCGTTAAAAAGTATCTTTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGGGT GTTTACAACTATCCTTCATGAACACAAAAACACAACGAAACATCGCAGACGGAGTTAGAA GATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTCATCGCGC GAAGTACGCAAAATAGTCCACCAGTCCATCACTACACCGTCCGCGCACTGATCAGGGATA GCGTCTAGCACTGGTTGCTTTTGTTGGTTAGGGATTAGTTTTAGATCGCATAGAAGAGTG CATAGGAATGAATTTGATGCCATATCAAATTTGTTGTTCAAACAAAACCCGGAAAGTCGC CGTTGCGTAGCCGAAAAGGCTCAAAGTTTGTGTCCGTGGGAGTACTATTCCGATCAGTTT TTCCACACTGTCACACTGTCAGATGGAAATACGAAATGTTGGTATCTTACTTCCCCGAGT TCGAACGATGAGTGAAGCTACGCATCGGACATTTTACGCTAGTGTTACAGTTAATGCTTT GCGCGTTCAAAATCGTTATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGG ATAGCAACGCTAGGAGATCAACCCTAACACAGACAGTTAAATCATTCACTACCACACCCC AAGGAGGATTAATATCCGCCGGACAGTATTTATTAGTAAAGGGTAGCGCAACACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2499#0      CAAGAATTGCCCGAGGTGTGTTACAGGTCATCGCGCGAAGTACGCAAAATAGTCCACAGT 60
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      CCATCACTACACCGTCCGCGCACTGATCAGTGGATAGCGTCTANCACTTGGTTGCTATAT 120
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      ATGGTACGGGTTACGGGACTTTAGTTTCTAGATTCGCCATAGAAGAGTTGCATAAGCGAA 180
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      CTTGAATTTGATTGCCATATTCAAAAACTTCTTGTTGTTCAACAACCAAAACCGGGAACN 240
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      GGTCGGCCCGGTATGGCCGTAAGCCCCGAAAAAGGGCGTCCAAANAGTTCCGGTTGGTTC 300
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      CCGGTTGGGGAAAGGTTAACCTAATTTCCCCGGAATTCCAANGGTTTTTATTACCCAAAA 360
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      ACTGGTTTCAACAACCTTGGTTCCAGACATTTGGGGAACACTTACCGACCACACCTCTGC 420
consensus_2499#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_2499#0      GGTGTACGGGGGGTCTAATTTTCCCTTATNGTAACCATTTTTACTCCGCCCCGGGGAAAG 480
consensus_2499#1      CGT-TAAAAAGTATCT--TTCTGCTTTAGACCGTTTACTGCTAGCAAGACGTAGATTAGG 58
                       ** **    *  ***  ** * * ***        * *  **    * *   *   * *

consensus_2499#0      GTTTTCCCGGACAACTCGCAATTTCGGCACACGTTTTTGGAAAAAAGGCTTTAAAACCGG 540
consensus_2499#1      GTGTTT----ACAACTATCC-TTCATGAACACAAAAACACAACGAAACATCGCAGACGGA 113
                      ** **     ******  *  **   * ****        **  **   *   * ** * 

consensus_2499#0      GGCC-AATTTCTCGGGGGAACCCAAATTTATTTTAACCCTGGCCCTCACAGAGTTTGGTG 599
consensus_2499#1      GTTAGAAGATCACAAAGAAACGCAAAATGCGTCAAACTTCAGGCAACAGGGTACAGGGTC 173
                      *    **  ** *   * *** **** *   *  ***    * *  **  *     *** 

consensus_2499#0      ATTTAACCCNCACAAGGTAGTNACAACACTATTGGCGTCATATATTGGGGGCCAGCCCCG 659
consensus_2499#1      AT------CGCGCGAAGTACGCAAAATAGT-------CCACCAGTCCATCACTACACCGT 220
                      **      * * * * ***   * ** * *        **    *      * *  **  

consensus_2499#0      TTGTTTTCCCAACGAAAACAACGAGTTACCCCGNTTGCTGCAAACTTATTTATCAAAAGG 719
consensus_2499#1      CCGCGCACTGATCAGGGATAGCGTCTAGCACTGGTTGCT-----TTTGTTGGTTAGGGAT 275
                        *    *  * *    * * **  *  * * * *****      ** **  * *     

consensus_2499#0      GCCTTTATGGGCGCTTCATGGGAGGGT-TATTACCCCCCTTTTTGTCCCAAATTTTGGGA 778
consensus_2499#1      TAGTTTTAGATCG---CATAGAAGAGTGCATAGGAATGAATTTGATGCCATATCAAATTT 332
                         ***  *  **   *** * ** **  **         ***  * *** **       

consensus_2499#0      ACTTTTTCC-CAAAACCGGGAAAATATANCTCCTTATCCCCCGGGAGAATTTTAAATTTT 837
consensus_2499#1      GTTGTTCAAACAAAACCCGGAAAGT---CGCCGTTGCGTAGCCGAAAAGGCTCAAAGTTT 389
                        * **    ******* ***** *      * **      * * * *   * *** ***

consensus_2499#0      CACAACGGGGAACTTTAACGGCGCACAAAAATACCTGGGGGGCCCCCTTCTTCAACAGGC 897
consensus_2499#1      GTGTCCGTGGGAGTACTATTCCG-ATCAGTTTTTCCACACTGTCACACTGTCAGATGGAA 448
                           ** ** * *   *   ** *  *   *  *      * * *  * *   *  *  

consensus_2499#0      TGGGGCGACACAGGGCAACTTTTTTCCCCGACAGANAAGAGGCCCCCCCGTTATTAAAAA 957
consensus_2499#1      ATACGAAATGTTGG-TATCTTACTTCCCCGAGTTCGAA----------CGATGAGTGAAG 497
                          *  *    **  * ***  ********     **          ** *     ** 

consensus_2499#0      ATAAGACCACTATGCCNGAANATGGGGTGAAACACCCACAACAGGGGNGTTTCTGTCCAA 1017
consensus_2499#1      CTACGCATCGGACATTTTACGCTAGTGTTACA-GTTAATGCTTTGCGCGTTCAAAATCGT 556
                       ** *      *      *   * * ** * *     *      * * ***      *  

consensus_2499#0      CAANACANACGAGTTTTTCCCCGACAACATTTTTATTTGCCCCAACAGCGTTTTTATAAA 1077
consensus_2499#1      TATTAGCTGCTGGTTCCTTCATGATCACGATCCTCCGATATAGGATAGCAACGCTAGGA- 615
                       *  *    *  ***  * *  **  **  *  *          * ***     **  * 

consensus_2499#0      TAAGCAGCCCGCAAAAAACCGTAGAACGTGCTCGCTCCCCCGAAAATACGGGTGGGGNGC 1137
consensus_2499#1      -GATCAACCCTAACACAGACAGTTAAATCATTCACTACC---ACACCCCAAGGAGGATTA 671
                        * ** ***  * * *  *    **     ** ** **   * *   *  *  **    

consensus_2499#0      ACAACTGGGGNGCCACTCTTTGACCANACCAGGATTTTNAGACGATTTTCCACCCAGGGT 1197
consensus_2499#1      ATATCCGCCGGACAGTATTT--ATTAGTAAAGGGTAGCGCAACACC-------------- 715
                      * * * *  *  *     **  *  *    *** *      **                 

consensus_2499#0      GTACCCCAGGTGGATGNTGAACACCCACAACGTGCGGCGTCTAAACGTATTTCTTGTTCA 1257
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      CACCTTTTGTTNAAACGCGGTTTTACACTACACAAACGGGTGGGGTGGTTTACTATAACA 1317
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      GAGGAGCCCGATGGAGCCCANCAATCATATGGCGAAACGCCCCCNCANAATAATAGACCA 1377
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      GAAAACCTCCCCCGGGGNTCACTATTTTNNATGTCCACCCCCCGGTGGGTGGAACTTTGT 1437
consensus_2499#1      ------------------------------------------------------------
                                                                                  

consensus_2499#0      GCACCCCATTTNGGTGGGTCGGCCCCCACAAAAAGCAGACCACGA 1482
consensus_2499#1      ---------------------------------------------
                                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)