These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGCTCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCAAATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCGTCCATCAATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAATTATTTTCTAATTTATGATTCCATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGGGCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG] [+] EMBL BX626079 [GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGCTCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCAAATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCGTCCATCAATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAATTATTTTCTAATTTATGATTCCATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGGGCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG] consensusID : consensus_250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGAGCAGATGGGTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCTTCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACCAATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCCATACGTGGCCACGTTAGGAAGATTTGCCCAGGAAGGAACAAACTGCTT] [+] EMBL BM644045 [CCGAGCAGATGGGTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATACAAATCTTCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGCCGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACCAATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTACCAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCCCAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAGAAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTGTAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGTGAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTAACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCCATACGTGGCCACGTTAGGAAGATTTGCCCAGGAAGGAACAAACTGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_250#0 GTGCTGTTCTTTTAGCTCGCATTTTTTAGTTCAAATACAGAAAAAACATGTGAAATAATA 60 consensus_250#1 ------------------------------------------------------------ consensus_250#0 CAAATCCTCCGTGTTACTCGTGCTGATAACTTCATATGCAGCTTCGTGTACATATCTAGC 120 consensus_250#1 -------------------------------------------CCGAGCAGATGGGTGC- 16 ** * * ** * consensus_250#0 TCCATGTAATCACAGGTCACGGAAACTAACTCCAATAACTTCCAAAAGCTCCAATCCTCA 180 consensus_250#1 ----TGTTCTTTTAGCTCGCATTTTTTAGTTCAAATA-----CAGAAAAAACA--TGTGA 65 *** * ** ** * ** ** **** ** ** ** * * consensus_250#0 AATCCTGCTCTTATCTCACTTTTTCTTTCTCATTGGCCTGCTTACGATTGAGCCCAGCGC 240 consensus_250#1 AATAATACAA--ATCT---TCCCTGCTTTCCATTGGCCTGCTTACGATTGAGCCCATCGC 120 *** * * **** * * ** ************************** *** consensus_250#0 CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCC------GTCCATC 294 consensus_250#1 CGTTGAATGGCCGGGACTACTATTATTTTATCAGGAGGCTCGATGCCTTCAGCGTCCACC 180 *********************************************** ***** * consensus_250#0 AATGCAGGCATCCGATCACCGACAGACCTTGCTTAGCCTGATTCCGGATCCACCTAGTAC 354 consensus_250#1 AATGCAGGCATCCGATCACCGACAGACCCTGCTTAGCCTGATTCCGGATCCACCTAGTAC 240 **************************** ******************************* consensus_250#0 CAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCC 414 consensus_250#1 CAAACACAGGACCGACCACTTTCTTGGAGGGCATTACTACGGCATTTTCATTACATGCCC 300 ************************************************************ consensus_250#0 CAGCCATCGTATCATAGGCCCTGAGTACCGTTAGGATATCCGATTCACCGTACACCTCAG 474 consensus_250#1 CAGCCATCGTATCATAGGCCCTGACTACCGTTAGGATATCCGATTCACCGTACACCTCAG 360 ************************ *********************************** consensus_250#0 AAAGCTTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTG 534 consensus_250#1 AAAGCGTAGCATTGTTGATTTGTATGGCATTAGTTATACCTAAAAATTGGAAGCAGTTTG 420 ***** ****************************************************** consensus_250#0 TAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAA--------------GCGGT 580 consensus_250#1 TAATCAGGATAATGGTTTACCTTCCGCAAGAGTGTCAGGAACCACTTACAGTCAAGCGGT 480 ***************************************** ***** consensus_250#0 GAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTA 640 consensus_250#1 GAATTGTGCCATATGCTTATCATTAACCTCGAAAATTTTACTGACAGCGTATAATGGTTA 540 ************************************************************ consensus_250#0 ACAACAGCGCGTAGCTGTAAGTTTATACCGGTTTTAA-TTATTTTCTAATTTATGATTCC 699 consensus_250#1 ACAACTGCGCGTAGCTGTAAGTTTATACCGGTTTTAAATTATTTTCTAATTTATGATTCC 600 ***** ******************************* ********************** consensus_250#0 ATACGTGGNCACGTTAGGAAGATTTTGCCCAGGAAAGAACAAACTGCTTANATATATTGG 759 consensus_250#1 ATACGTGGCCACGTTAGGAAGATTT-GCCCAGGAAGGAACAAACTGCTT----------- 648 ******** **************** ********* ************* consensus_250#0 GCAAAAACTGGNGCGTTTTAGCTCATCTTGAGAATAG 796 consensus_250#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||