These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCCACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCGCAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCCCGAGCGGCTGGTGGCGGAGGTGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCTCCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGACACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCAGGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTGATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGCTTGATGCGTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTTAGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG] [+] EMBL BM588458 [CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCCACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCGCAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCCCGAGCGGCTGGTGGCGGAGGTGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCTCCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGACACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCAGGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTGATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGCTTGATGCGTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTTAGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG] consensusID : consensus_2503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [ATCGCCCGAGGTTAAAACGCGCTCGTGTACGTCGATCACGACTCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTGCGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCAAAACGTTCAGTGCGTTCAGCTGCAAGGAGCTGCATGTGTGGAAGGTATCTGCTGCACCGAGAACAAACCATTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCTTACACCTTCCGAGCTTGAACNGGACACACTGCGCCACCTGATTGCGGGAAGCTGCAGCATTACCCGGCATTGCAGGTCGCACGGTTAATTTGGCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA] [+] EMBL AL930844 [ATCGCCCGAGGTTAAAACGCGCTCGTGTACGTCGATCACGACTCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTGCGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCAAAACGTTCAGTGCGTTCAGCTGCAAGGAGCTGCATGTGTGGAAGGTATCTGCTGCACCGAGAACAAACCATTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCTTACACCTTCCGAGCTTGAACNGGACACACTGCGCCACCTGATTGCGGGAAGCTGCAGCATTACCCGGCATTGCAGGTCGCACGGTTAATTTGGCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2503#0 CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCC 60 consensus_2503#1 ------------------------------------------------------------ consensus_2503#0 ACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACA 120 consensus_2503#1 ------------------------------------------------------------ consensus_2503#0 ACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGC 180 consensus_2503#1 ------------------------------------------------------------ consensus_2503#0 TGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCG 240 consensus_2503#1 ----------------ATCGCCCGAGGTTAAAACGCGC--TCGTGTACGTCGATCACGAC 42 ******** *** ** ** *** * * ** * consensus_2503#0 CAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCC-CGAGCGGCTGGTG--G 297 consensus_2503#1 TCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTG 102 ** *** ** * *** ** * ** *** *** ** *** * consensus_2503#0 CGGAGG--TGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCT 355 consensus_2503#1 CGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCA-AAA 161 ** *** ***** * ** * * * * * **** ** ** * ** ** * consensus_2503#0 CCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGA 415 consensus_2503#1 CGTTCAGTGCGTTCAGC--TGCAAGGAGCT---GCATGTG-TGGAAGGTATCTGCTGCAC 215 * *** ** * * * * ** **** *** * * ****** * ** * consensus_2503#0 CACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCA 475 consensus_2503#1 CGAGAACAAACCA---TTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCT 272 * **** * * ****** ** * ** * * ** ** consensus_2503#0 GGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTG 535 consensus_2503#1 TACACCTTCCGAGCTTGAACNGGACACACTGC-GCCACCTGATTGCGGGA-AGCTGC--A 328 * * **** ** * * * * ** ** * * ** * ** * consensus_2503#0 ATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGC 595 consensus_2503#1 GCATTACCCGGCATTGCAGGTCGCA----CGGTTAATTTGGCAACGACAACTACACTCAG 384 * * * *** * ** * * ***** *** ** * * consensus_2503#0 TTGATGC-GTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTT 654 consensus_2503#1 GTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA 444 ** ** * * ** * * * ** * * * ** * consensus_2503#0 AGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG 690 consensus_2503#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||