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Anopheles gambiae
cluster # 251 cluster # 251       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_251#0 length = 912 sequences # 1  
consensus_251#1 length = 676 sequences # 1  

consensusID : consensus_251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 912
fasta sequence
                              [GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGCCTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCGTCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTACACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAACAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCACACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCACCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGAGCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGTAACGGATCGATCCGTTAAGTTCCCAAGGTATCAGGCAAAGCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCGGAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCGATTCCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGATCTGNGGTTGGGCACAATTCNCCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTGGACACCAACGNAGGGTNA]

[+] EMBL BX467210             [GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGCCTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCGTCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTACACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAACAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCACACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCACCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGAGCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGTAACGGATCGATCCGTTAAGTTCCCAAGGTATCAGGCAAAGCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCGGAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCGATTCCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGATCTGNGGTTGGGCACAATTCNCCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTGGACACCAACGNAGGGTNA]


>consensus_251#0 GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTG CACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAA CCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCT AACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGC CTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCG TCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTAC ACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAA CAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCAC ACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCA CCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGA GCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGTAACGGATCGATCCGTTAAGTTCCC AAGGTATCAGGCAAAGCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCGGAA TCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCGATTCCAA GAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGATCTGN GGTTGGGCACAATTCNCCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTGGACACC AACGNAGGGTNA



consensusID : consensus_251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence
                              [GGATTTCATTAGAGCCTTATCCTGGTGTTGTTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCCCTTAGCGTAGTTTAGTTCGCAGATCCCATTGTTTTAGAGATGCTCTAATTCTAACATTTACTAGCATCTTTTAGTTACTGTTGCTTACTAATTAACCTATTATCGCTTTGTAATCTAATCATCCACACTCCCTGTAACAAAAAATGTCCCCATGTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTGTTTTAACTATCCTCATCAGAGCTCGGCAAGACGTGTAGGACTGCAATGCTCTAACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCAAGTCGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTCCTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCATTTTATTGTACGTCAGATCGGGCAGCACGATTTGTGAACCAATTTTTCCAAGCCGCTTGAAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG]

[-] EMBL BX622965             [GGATTTCATTAGAGCCTTATCCTGGTGTTGTTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCCCTTAGCGTAGTTTAGTTCGCAGATCCCATTGTTTTAGAGATGCTCTAATTCTAACATTTACTAGCATCTTTTAGTTACTGTTGCTTACTAATTAACCTATTATCGCTTTGTAATCTAATCATCCACACTCCCTGTAACAAAAAATGTCCCCATGTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTGTTTTAACTATCCTCATCAGAGCTCGGCAAGACGTGTAGGACTGCAATGCTCTAACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCAAGTCGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTCCTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCTAACCGTCAGACCAATTCGAGCAGTAGCAGCATTTTATTGTACGTCAGATCGGGCAGCACGATTTGTGAACCAATTTTTCCAAGCCGCTTGAAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG]


>consensus_251#1 GGATTTCATTAGAGCCTTATCCTGGTGTTGTTGTTGTTGTTGTTGCTTGGAACCCNTCCG AATGACCCCGAATTCCCTTAGCGTAGTTTAGTTCGCAGATCCCATTGTTTTAGAGATGCT CTAATTCTAACATTTACTAGCATCTTTTAGTTACTGTTGCTTACTAATTAACCTATTATC GCTTTGTAATCTAATCATCCACACTCCCTGTAACAAAAAATGTCCCCATGTATCCGTGTT GTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTGTTTTAACTATC CTCATCAGAGCTCGGCAAGACGTGTAGGACTGCAATGCTCTAACTGCAACACAACCAACA CTTCGCTGTGGCGCCGCAATCAAGTCGGTGAACCAGTCTGCAATGCGTGTGGACTGTACT ACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTCCTTTGCAGTCTCGTAAGCGC AAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCG GCTAACCGTCAGACCAATTCGAGCAGTAGCAGCATTTTATTGTACGTCAGATCGGGCAGC ACGATTTGTGAACCAATTTTTCCAAGCCGCTTGAAGTGCTTAAAAAACATTCCATCCTAA CAGTTCAATTTGTTCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_251#0      GGCCAGAATCGGCACGTNGGTGAACCAGTCTGCAATGCGTGTGGACTGTACTACAAACTG 60
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      CACAACGTGAACCGTCCACTGGCGATGAAAAAAGATAACATACAGTCTCGTAAGCGCAAA 120
consensus_251#1      ------------------------------------------------------------
                                                                                 

consensus_251#0      CCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGAGTAACGCTAGTAACGCTTCGGCT 180
consensus_251#1      --------------------------------------GGATTTCATTAGAGCCTTATCC 22
                                                             *    * **  ** *   * 

consensus_251#0      AACCGTCAGACCAATTCGAGCAGTAGCAGCCTAGCCGAGACACCGAAGAAAACAGATGGC 240
consensus_251#1      TGGTGTTG------TTGTTGTTGTTGTTGCTTGGAACCCNTCCGAATGACCCCGAATTCC 76
                         **        **   *  ** *  ** * *        *  * **   *  **  *

consensus_251#0      CTCAAGTTGATGAACATTGCGGAAAACTCCTCCTTCGACAAGCTGCTGCCATCGTCACCG 300
consensus_251#1      CTTAGCGTAGTT--TAGTTCGCAGATCCCATTGTTTTA-GAGATGCTCTAATTCTAACAT 133
                     ** *   *  *    * * ** * * * * *  **  *  ** ****   **  * **  

consensus_251#0      TCAAGCGAGGGCAGCAATCAGTCGCCCGCGCACCATAACCATATGTCCCCGATCTGCTAC 360
consensus_251#1      TTACT----AGCATCTTTTAGTTACTGTTGCTTACTAATTA----------ACCTATTAT 179
                     * *       *** *  * ***  *    **    ***  *          * **  ** 

consensus_251#0      ACGCAGCAGGTCCCCTCGCCAATCACCAGCACTTCCTCGAGCGGCGCAATCTGTCAGCAA 420
consensus_251#1      -CGC------TTTGTAATCTAATCATCCACACTCCCT---GTAACAAAAAATGTCCCCAT 229
                      ***      *       * ***** *  **** ***   *   *  **  ****  ** 

consensus_251#0      CAGCAAATATAACAACCAGCAACCCAAAGCCACCAATGCCTTTTTGCTACAGTCGCCCAC 480
consensus_251#1      GTATCCGTGTTGTTTGTTTCGATGTTCGTTTAACAAAAACCGTTTCTAATACTGATTCTG 289
                            * *         * *         * ***   *  ***   * * *    *  

consensus_251#0      ACCGATGAACATGTTCGTCGGCAGTCCCACGGGCGGTATCGGGTCGGGTCAGCATCACCA 540
consensus_251#1      TTT--TAACTATCCTCATCAG-AGCTCGGCAAGACGTGTAGGACTG---CAATG-CTCTA 342
                          * *  **  ** ** * **  *  *  *  ** * **   *   **    * * *

consensus_251#0      CCATCAGCATCATCAAATCCACGGCATGCCGCTGCCACCGGNGGCACTGAGCCCGGGTGA 600
consensus_251#1      ACTGCAACACAACCAACACTTCGCTGTGGCGCCGCAATCA-AGTCGGTGAACCAGTCTGC 401
                      *  ** **  * ***  *  **   ** *** ** * *   * *  *** ** *  ** 

consensus_251#0      GCTACAGTATGGCGGGCGTNGGGCATGGAAACAAGT-AACGGATCGATCCGTTAAGTTCC 659
consensus_251#1      AATGC-GTGTGGACTGTACTACAAACTGCACAACGTGAACCGTCCACTGAATCAATTTTC 460
                       * * ** ***   *        *  * *  * ** *** *  *  *   * ** ** *

consensus_251#0      CAAGGTA-TCAGGCAAA-GCCCACGGGAAATCGGCCCGAGGGACATTGCTTGTACTACCG 717
consensus_251#1      CTTTGCAGTCTCGTAAGCGCAAACCGAAGGGAAGCAAAAATAGCGATGGTAACGGCAAGA 520
                     *   * * **  * **  **  ** * *     **   *    *  ** *      *   

consensus_251#0      GAATCATTGGCTTGGCCTGGGGCCCTGATTGTTGAACCGGGTAAANGCAGTCTCCG-ATT 776
consensus_251#1      GTAACGCTAGTAACGCTTCGG---CTAACCGTCAGACCAATTCGAG-CAGTAGCAGCATT 576
                     * * *  * *    ** * **   ** *  **   ***   *  *  ****  * * ***

consensus_251#0      CCAAGAAACCTCCGAGCTTGGNGGCACCAAATTGGNTAAAAGGACTTGGGAAACCGCGAT 836
consensus_251#1      TTATTGTACGTCAGATCG-GGCAGCAC--GATTTGTGAACCAATTTTTCCAAGCCGCTTG 633
                       *    ** ** ** *  **  ****   *** *  **      **   ** ****   

consensus_251#0      CTGNGGTTGGGCACAATTCN--CCTTACGGCCAAGTGTAACCCACAGTAAGGGACACTTG 894
consensus_251#1      AAGTGCTTAAAAAACATTCCATCCTAACAGTTCAATTTGTTCG----------------- 676
                       * * **    *  ****   *** ** *   * * *   *                  

consensus_251#0      GACACCAACGNAGGGTNA 912
consensus_251#1      ------------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)