These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGCCAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGCGGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACACACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTNACCANCCGCCACCTCTAACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTTACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACCCAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCACCACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGTNGCGCC] [+] EMBL AL930959 [AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGCCAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGCGGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACACACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTNACCANCCGCCACCTCTAACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTTACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACCCAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCACCACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGTNGCGCC] consensusID : consensus_2513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [ATCGCCCCGAGGNTGGACGCACGTGTACAGACAAAGCCGGGGGTCGCCCACAACAATCTATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCGTGTGTTTAAGTAAACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTTTGGTGTCTGATTATAACATAGTGATTAGTGGTATTATGACGTTGAGTGCGGTTTAAAATGAATAGGAGCAGCAGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATTTATTACACGATTACAAAACTACCATTATAATATATACATATACACACATTATATACACTCACAGGCAGACTGTATGAAGCATTGCTACATTCTGCATGGAGTGACGTAATAAGGT] [+] EMBL AL931285 [ATCGCCCCGAGGNTGGACGCACGTGTACAGACAAAGCCGGGGGTCGCCCACAACAATCTATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCGTGTGTTTAAGTAAACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTTTGGTGTCTGATTATAACATAGTGATTAGTGGTATTATGACGTTGAGTGCGGTTTAAAATGAATAGGAGCAGCAGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTTTCTAAGTAACGAAACCTCGCATTTATTACACGATTACAAAACTACCATTATAATATATACATATACACACATTATATACACTCACAGGCAGACTGTATGAAGCATTGCTACATTCTGCATGGAGTGACGTAATAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2513#0 AATCGCCCGAGGTTAATAGGAGCAGCAGGGACAGGATCCTTTGTTGGATGAAAAAGAGGG 60 consensus_2513#1 -----------------------------------------------ATCGCCCCGAGGN 13 ** **** consensus_2513#0 AGGACATACCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGAT 120 consensus_2513#1 TGGACGCAC---GTGTACAGACAAAGCC----------GGGGGTCGCCCACAACAATC-T 59 **** ** ***** * *** * * * * * * ** ** * consensus_2513#0 CAGCCCAGATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTAT-TGTA 179 consensus_2513#1 ATGCGTGTATTGTATTCGGAGGATAAAAGCTAGCCTAAACGACCATATGGTATGTATGCG 119 ** ** * ** * *** * ** * ** * ** * * * ** consensus_2513#0 CCTTTCTAAGTAACGAAACCTCGCATATTCCTTCACCCGCGTGTGTGCGTGTCTGCTCGC 239 consensus_2513#1 TGTGTTTAAGTAA----ACTGGATGTACTACTTCCTACCTTACTCTACTCTACTACCCTT 175 * * ******* ** ** * **** * * * * ** * * consensus_2513#0 CAATGGGCATTGTCTGTTAAAGCTGTGAGTGTGCACCTGAGCCTGAGCCGGCGGCCTGGC 299 consensus_2513#1 TGGTGTCTGAT-TATAACATAGTGATTAGTGGTATTATGACGTTGAGT--GCGGTTTAAA 232 ** * * * * ** * **** *** **** **** * consensus_2513#0 GGAAACCGGACTCACGCTTANTAGCATGGGCCTTCTAGCTAAACGAACCGCCTGCACACA 359 consensus_2513#1 ATGAATAGGAGCAGC----AGGGACAGGATCCTTTGTGGATGAAAAAGAGGGAGGACATA 288 ** *** * * ** * **** * * ** * * *** * consensus_2513#0 CACGCAACACCCTAACTAAACCCCATCGCCCACTTCCACTTN-ACCANCCGCCACCTCTA 418 consensus_2513#1 CCGAGTGTATCGCCAAGACGTAAAATAGAAGAAGAGCACGCGCAGTAACGATCAGCCCAG 348 * * * * * ** * * *** * * * ** * * consensus_2513#0 ACCACACCNNCACCCTACCCCCACATNCACTTACACCTANCTTACATAACCACTTAACTT 478 consensus_2513#1 ATCCAACTCTGTGGACATTTCTAGAAGTATAAGATAAAATCTTTTATTGTACCTT--TCT 406 * * ** * * * * * * *** ** *** * consensus_2513#0 ACCCAAACCCAAACCCCAAACCTTACTCAACANTAACCTTAACCACACCCCTCCCAAACC 538 consensus_2513#1 AAGTAA--CGAAACCTCGCAT-TTATTACACGATTACAA-AACTACCATTATAATATATA 462 * ** * ***** * * *** * ** * ** *** ** * * * consensus_2513#0 CAAACGGCCCACACCGCGCACNCCCCCTGGGGCNCCACCTGTNCACACACANCGCCCCAC 598 consensus_2513#1 CATATA-CACACATTATATACACTCACAGGCAGACTGTATGAA-----GCATTGCTACAT 516 ** * * **** ** * * * ** * ** ** ** ** consensus_2513#0 CACTTCTATCGGGCCGCCTTAAACCCCACCCTTACTACCCCCCTTGGTGCCCACNCTCGT 658 consensus_2513#1 TCTGCATGGAGTGACGTAATAAGGT----------------------------------- 541 * * * ** *** consensus_2513#0 NGCGCC 664 consensus_2513#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||