These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA] [+] EMBL AL932262 [CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA] consensusID : consensus_2518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA] [+] EMBL AL931031 [AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2518#0 CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCN-CGT 59 consensus_2518#1 -------------------------------------------AGAATCCCCCGAGGTTT 17 *** * * consensus_2518#0 GCATGTGCTCTCTATTTG--TAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 117 consensus_2518#1 GCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 77 ********* ******* *************************************** consensus_2518#0 GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAAT 177 consensus_2518#1 GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAAT 137 ******************************************************** *** consensus_2518#0 GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 237 consensus_2518#1 GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 197 ************************************************************ consensus_2518#0 ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 297 consensus_2518#1 ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 257 ************************************************************ consensus_2518#0 CATTTC---AGGTATATCGAATGTTTAG-AGGGAACTAGGTTTTACACCAAATGCAGCTA 353 consensus_2518#1 TATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTA 317 **** ******************* ******************************* consensus_2518#0 CATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGT-AAACAAAAATAG 412 consensus_2518#1 CATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAG 377 ******************************************* *** ************ consensus_2518#0 ACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 472 consensus_2518#1 ACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 437 ** ********************************************************* consensus_2518#0 CATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAG 532 consensus_2518#1 CATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAA-AGAG 496 ******************************** ************* ******** **** consensus_2518#0 AACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACT 592 consensus_2518#1 AACAAACA---------------------------------------------------- 504 ******** consensus_2518#0 GATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCA 652 consensus_2518#1 ------------------------------------------------------------ consensus_2518#0 TCATGCATTTGGCCATTGGTGTAGGCATTA 682 consensus_2518#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||