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Anopheles gambiae
cluster # 2518 cluster # 2518       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2518#0 length = 682 sequences # 1  
consensus_2518#1 length = 504 sequences # 1  

consensusID : consensus_2518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA]

[+] EMBL AL932262             [CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA]


>consensus_2518#0 CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTG CATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCT CAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAG GGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATT CGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCAT TTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAA CATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCT ACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATA GGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACA AGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANG CATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCAT TTGGCCATTGGTGTAGGCATTA



consensusID : consensus_2518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA]

[+] EMBL AL931031             [AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA]


>consensus_2518#1 AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAA AAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAA AAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGA CACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAAT TCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTT TACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGT TCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTA AGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGA GCAAATAAGAAAAGAGAACAAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2518#0      CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCN-CGT 59
consensus_2518#1      -------------------------------------------AGAATCCCCCGAGGTTT 17
                                                                   ***     *     *

consensus_2518#0      GCATGTGCTCTCTATTTG--TAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 117
consensus_2518#1      GCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 77
                      ********* *******    ***************************************

consensus_2518#0      GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAAT 177
consensus_2518#1      GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAAT 137
                      ******************************************************** ***

consensus_2518#0      GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 237
consensus_2518#1      GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 197
                      ************************************************************

consensus_2518#0      ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 297
consensus_2518#1      ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 257
                      ************************************************************

consensus_2518#0      CATTTC---AGGTATATCGAATGTTTAG-AGGGAACTAGGTTTTACACCAAATGCAGCTA 353
consensus_2518#1      TATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTA 317
                       ****    ******************* *******************************

consensus_2518#0      CATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGT-AAACAAAAATAG 412
consensus_2518#1      CATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAG 377
                      ******************************************* *** ************

consensus_2518#0      ACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 472
consensus_2518#1      ACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 437
                      ** *********************************************************

consensus_2518#0      CATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAG 532
consensus_2518#1      CATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAA-AGAG 496
                      ******************************** ************* ******** ****

consensus_2518#0      AACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACT 592
consensus_2518#1      AACAAACA---------------------------------------------------- 504
                      ********                                                    

consensus_2518#0      GATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCA 652
consensus_2518#1      ------------------------------------------------------------
                                                                                  

consensus_2518#0      TCATGCATTTGGCCATTGGTGTAGGCATTA 682
consensus_2518#1      ------------------------------
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)