Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2531 cluster # 2531       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2531#0 length = 658 sequences # 1  
consensus_2531#1 length = 628 sequences # 1  

consensusID : consensus_2531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence
                              [ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTGTACACTTTTTCGGCCTCAGTAGCGGTGGTGGTGGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCAGCATACTGAAGGCGTCGGCCGGGAAGCTTTCCGGCGTGAGTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGCCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACCGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAACGACCACCCAGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCGGAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAGGATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTGAACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGACCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT]

[+] EMBL BX620125             [ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTGTACACTTTTTCGGCCTCAGTAGCGGTGGTGGTGGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCAGCATACTGAAGGCGTCGGCCGGGAAGCTTTCCGGCGTGAGTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGCCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACCGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAACGACCACCCAGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCGGAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAGGATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTGAACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGACCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT]


>consensus_2531#0 ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTGTACACTTTTTCGG CCTCAGTAGCGGTGGTGGTGGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGA CCAGCATACTGAAGGCGTCGGCCGGGAAGCTTTCCGGCGTGAGTGCACCCAAGCACAAGC AACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGCCCCAGTGGATCGATC GTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACCGA CGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGA CTACGGAAGCGCCAGTAACGACCACCCAGGAGCCGGCACCGCTGGAACCGACCGATCCGG TCGAGCCGGAAGCAGCACCGGAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCA GCGCACCGGTGACTGTGGAGGATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCG CCATCGCGCCCGAAGACGTGAACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATG TGCGGGANGAGAGCTTCCGACCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT



consensusID : consensus_2531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence
                              [AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAATTGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGTGCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGCAGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTACACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAAGCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCGATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGACCAACCCAGGGAGCCGGCNCCGCTGGAACC]

[+] EMBL AL931191             [AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAATTGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGTGCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGCAGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTACACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAAGCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCGATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGACCAACCCAGGGAGCCGGCNCCGCTGGAACC]


>consensus_2531#1 AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAAT TGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGT GCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGC AGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTA CACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGA AGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAA GCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCC AACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCT ACAGTGAAGCGTTCGAGGCGATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACAA CGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGACC AACCCAGGGAGCCGGCNCCGCTGGAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2531#0      ------------------------------------------------------------
consensus_2531#1      AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAAT 60
                                                                                  

consensus_2531#0      ------------------------------------------------------------
consensus_2531#1      TGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGT 120
                                                                                  

consensus_2531#0      ------------------------------------------------------------
consensus_2531#1      GCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGC 180
                                                                                  

consensus_2531#0      ----------ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTT-GTA 49
consensus_2531#1      AGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTA 240
                                ********************************************** ***

consensus_2531#0      CACTTTTTCGGCCTCAGTAGC-GGTGGTGGTGGTGG------------------AACCGA 90
consensus_2531#1      CACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGA 300
                      ********************* **************                  ******

consensus_2531#0      AGCAGGATAATGTGTTTGCACTGCCACTGACCA-GCATACTGAAGGCGTC-GGCCGGGAA 148
consensus_2531#1      AGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAA 360
                      ********************************* **************** *********

consensus_2531#0      GCTTTCCGG--CGTGAGT-GCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCC 205
consensus_2531#1      GCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCC 420
                      ******* *   ****** *****************************************

consensus_2531#0      AACGCTCCAGCACGATCTGCCCC-AGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCT 264
consensus_2531#1      AACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCT 480
                      *******************  ** ************************************

consensus_2531#0      ACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACC-GACGCGCGTATCGTTGCTTAGTACA 323
consensus_2531#1      ACAGTGAAGCGTTCGAGGC-GATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACA 539
                      ******************* ************** *************************

consensus_2531#0      ACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAA-CGAC 382
consensus_2531#1      ACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGAC 599
                      ******************************************************* ****

consensus_2531#0      CACCC--AGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCG 440
consensus_2531#1      CAACCCAGGGAGCCGGCNCCGCTGGAACC------------------------------- 628
                      ** **   ********* ***********                               

consensus_2531#0      GAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAG 500
consensus_2531#1      ------------------------------------------------------------
                                                                                  

consensus_2531#0      GATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTG 560
consensus_2531#1      ------------------------------------------------------------
                                                                                  

consensus_2531#0      AACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGA 620
consensus_2531#1      ------------------------------------------------------------
                                                                                  

consensus_2531#0      CCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT 658
consensus_2531#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)