These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTGTACACTTTTTCGGCCTCAGTAGCGGTGGTGGTGGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCAGCATACTGAAGGCGTCGGCCGGGAAGCTTTCCGGCGTGAGTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGCCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACCGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAACGACCACCCAGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCGGAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAGGATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTGAACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGACCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT] [+] EMBL BX620125 [ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTGTACACTTTTTCGGCCTCAGTAGCGGTGGTGGTGGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCAGCATACTGAAGGCGTCGGCCGGGAAGCTTTCCGGCGTGAGTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGCCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACCGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAACGACCACCCAGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCGGAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAGGATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTGAACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGACCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT] consensusID : consensus_2531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAATTGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGTGCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGCAGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTACACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAAGCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCGATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGACCAACCCAGGGAGCCGGCNCCGCTGGAACC] [+] EMBL AL931191 [AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAATTGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGTGCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGCAGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTACACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGAAGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAAGCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCCAACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCTACAGTGAAGCGTTCGAGGCGATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACAACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGACCAACCCAGGGAGCCGGCNCCGCTGGAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2531#0 ------------------------------------------------------------ consensus_2531#1 AAGAATNGCCCCGAGGATCTGCGCGAAATGGTGTGTGTGTGCGCGCTGTTTTGCTAGAAT 60 consensus_2531#0 ------------------------------------------------------------ consensus_2531#1 TGATGGGCTAAGGAAACGGTCCATAAAAGTGTTCCACCATGAAGTGTGCCGTGTATCTGT 120 consensus_2531#0 ------------------------------------------------------------ consensus_2531#1 GCCTTTTGGCAACGTTTGCTCTCGCGATCCCCAGTGCGGTGTGTGATCGTGCCGAGGAGC 180 consensus_2531#0 ----------ATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTT-GTA 49 consensus_2531#1 AGGACCTGACATTGCGCCGAAACCGCAGAACGGTGCAGTTCCTGGTTAATCATTTTTGTA 240 ********************************************** *** consensus_2531#0 CACTTTTTCGGCCTCAGTAGC-GGTGGTGGTGGTGG------------------AACCGA 90 consensus_2531#1 CACTTTTTCGGCCTCAGTAGCTGGTGGTGGTGGTGGTGGTTCGAAAAAGTGTGGAACCGA 300 ********************* ************** ****** consensus_2531#0 AGCAGGATAATGTGTTTGCACTGCCACTGACCA-GCATACTGAAGGCGTC-GGCCGGGAA 148 consensus_2531#1 AGCAGGATAATGTGTTTGCACTGCCACTGACCATGCATACTGAAGGCGTCTGGCCGGGAA 360 ********************************* **************** ********* consensus_2531#0 GCTTTCCGG--CGTGAGT-GCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCC 205 consensus_2531#1 GCTTTCCTGGCNGTGAGTTGCACCCAAGCACAAGCAACCGTCGTCGGCGGAACGTGAGCC 420 ******* * ****** ***************************************** consensus_2531#0 AACGCTCCAGCACGATCTGCCCC-AGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCT 264 consensus_2531#1 AACGCTCCAGCACGATCTGNNCCCAGTGGATCGATCGTCCGCACAAGCAGGCCAATCCCT 480 ******************* ** ************************************ consensus_2531#0 ACAGTGAAGCGTTCGAGGCCGATGCCCTGGAACC-GACGCGCGTATCGTTGCTTAGTACA 323 consensus_2531#1 ACAGTGAAGCGTTCGAGGC-GATGCCCTGGAACCTGACGCGCGTATCGTTGCTTAGTACA 539 ******************* ************** ************************* consensus_2531#0 ACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAA-CGAC 382 consensus_2531#1 ACGCGCGAGCCAGAGGAAACCACTACGACCAGCACGACTACGGAAGCGCCAGTAAACGAC 599 ******************************************************* **** consensus_2531#0 CACCC--AGGAGCCGGCACCGCTGGAACCGACCGATCCGGTCGAGCCGGAAGCAGCACCG 440 consensus_2531#1 CAACCCAGGGAGCCGGCNCCGCTGGAACC------------------------------- 628 ** ** ********* *********** consensus_2531#0 GAAAACCCAACCACGGTCGAGCCGGAAGAGCCAGCTACCAGCGCACCGGTGACTGTGGAG 500 consensus_2531#1 ------------------------------------------------------------ consensus_2531#0 GATGCACCGGCCCAGGAGGGCAGTACCGAAGCATCCGGCGCCATCGCGCCCGAAGACGTG 560 consensus_2531#1 ------------------------------------------------------------ consensus_2531#0 AACCGCCTGTCCGATGCGAGCCTCAGCGCACGGAACGATGTGCGGGANGAGAGCTTCCGA 620 consensus_2531#1 ------------------------------------------------------------ consensus_2531#0 CCGACGCCGATCCCGCTGGTAAGCTATCAGCATTACGT 658 consensus_2531#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||