These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [ATCGCCCGAGGTNNATCAGACTACAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTGGACAAGTTCAATTCGATCGAAGATTTCCGTGTGCTGGAACCGCAGATCAACGAAATGCTTGAGGGTGTCGGTACTCTGAAACCGTGTCAAACGAAGCGCCGCCCGAGAAGCGTTTCGGAGAGCGAGGGTGTCGCGGTGGTGGTCGGTTCCGCACCGGGACCGTCGCATGCCGGTAGCCATGCTTACCAGGCCGGAGGAAGTCGCCGCGGCGGCAGCAGCGGAAGTGGAGCCGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCGATGCGATTCAACGGGAAACAGACCGGTGGAGGTATCGAACCGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGATGCGGCGCAGGAGCGGATCGGCAGGAAATCGTGTAGTGCGCACGTTTAACAACCCGAGCAGCAGCCATCGTTCCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTAGCAACA] [+] EMBL AL932970 [ATCGCCCGAGGTNNATCAGACTACAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTGGACAAGTTCAATTCGATCGAAGATTTCCGTGTGCTGGAACCGCAGATCAACGAAATGCTTGAGGGTGTCGGTACTCTGAAACCGTGTCAAACGAAGCGCCGCCCGAGAAGCGTTTCGGAGAGCGAGGGTGTCGCGGTGGTGGTCGGTTCCGCACCGGGACCGTCGCATGCCGGTAGCCATGCTTACCAGGCCGGAGGAAGTCGCCGCGGCGGCAGCAGCGGAAGTGGAGCCGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCGATGCGATTCAACGGGAAACAGACCGGTGGAGGTATCGAACCGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGATGCGGCGCAGGAGCGGATCGGCAGGAAATCGTGTAGTGCGCACGTTTAACAACCCGAGCAGCAGCCATCGTTCCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTAGCAACA] consensusID : consensus_2533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAACGAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTGAGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGGACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGCTGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCGGATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTTCCCTTGCCTTTCTTACCC] [+] EMBL AL931223 [AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGGCCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAATATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAACGAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTGAGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGGACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGCTGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACACAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGCTACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCGGATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTTCCCTTGCCTTTCTTACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2533#0 ATCGCCCGAGGTNNATCAGACTAC-AAAATGGTCACTGTACGGGCTGGAGAAATTTTGGG 59 consensus_2533#1 --------AGAATCGCCCGAGGACGAAAATGGTCACTGTACGGGCTGGAGAAATTTTGGG 52 ** * ** ** *********************************** consensus_2533#0 CCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAAT 119 consensus_2533#1 CCTTCCAAAAGTACTACAAAAACGCTTCCAAGCTCACGGTAAACCCCAAGCTGAAGGAAT 112 ************************************************************ consensus_2533#0 ATTT-GGACAA-GTTCAATTCGATCGAAGATTTCC-GTGTGCTGGAACC-GCAGATCAAC 175 consensus_2533#1 ATTTTGGACAATGTTCAATTCGATCGAAGATTTCCTGTGTGCTGGAACCTGCAGATCAAC 172 **** ****** *********************** ************* ********** consensus_2533#0 GAAATGCTTGAG-GGTGTCGGTACTCTGAAACC-GTGTCAAAC-GAAGC-GCCG--CCCG 229 consensus_2533#1 GAAATGCTTGAGTGGTGTCGGTACTCTGAAACCTGTGTCAAACTGAAGCTGCCTGCCCTG 232 ************ ******************** ********* ***** *** ** * consensus_2533#0 AGAAGC-GTTTCGGAGAGC-GAGGGTGTCG--CGGTGGTGGTC-GGTTCC-GCACC-GGG 282 consensus_2533#1 AGAAGCTGTTTCGGAGAGCTGAGGGTGTCTGCTGGTGGTGGTCTGGTTCCTGCACCTGGG 292 ****** ************ ********* ********** ****** ***** *** consensus_2533#0 ACC-GTCGCATGCC-GGTA-GCCATGCTTACCAGGCCGGAGGAAGTCGCCGC------GG 333 consensus_2533#1 ACCTGTCGCATGCCTGGTATGCCATGCTTACCAGGCCTGGAGGAATGTCTGCCTGCTGGC 352 *** ********** **** ***************** * * * * * ** * consensus_2533#0 CGGCAGCAG--CGGAAGTGGAG--CCGGTTCATCGAGTCACAGCAATACTGGTCATTACA 389 consensus_2533#1 TGGCAGCATGCTGGAAGTGGATGCCTGGTTCATCGAGTCACAGCAATACTGGTCATTACA 412 ******* ********* * ********************************** consensus_2533#0 CAAGTCGTAACC-GATGCGATTCAACGGGAAACAGACC-GGTGGAGGTATCGAACC-GGC 446 consensus_2533#1 CAAGTCGTAACCTGATGCGATTCAACGGGAAACAGACCTGGTGGAGGTATCGAACCTGGC 472 ************ ************************* ***************** *** consensus_2533#0 TACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGA-TGCG-GCGCAG-GAGCG 503 consensus_2533#1 TACGCACCCGCACCGGCTCCTTCGGCGACTCAACACAGGTGACTGCGCGCGCAGCGANCG 532 ****************************************** **** ****** ** ** consensus_2533#0 GATCGGCAGGAAATCGTGTA-GTGCGCACGTT-TAACAACCCGAGCAGCAGCCA-TCGTT 560 consensus_2533#1 GATCGGCAGGAAATCGTGTACGTGCGCACGTTCTAACAACCCGAGCAGCAGCCACTCGTT 592 ******************** *********** ********************* ***** consensus_2533#0 CCCTTGCCTTTCTTACCCGTAGCAACATGCAGCAGCCCTCCACGTCAGGTAATGTAGGTA 620 consensus_2533#1 CCCTTGCCTTTCTTACCC------------------------------------------ 610 ****************** consensus_2533#0 GCAACA 626 consensus_2533#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||