These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [CCCCGGAGGAAAAAGCACACACGCACACCGTAGCCGCAGCCGCGTGGATTCGTCGACCATCGTTCGTGCCGCAACGACACTACGCAACGGCCGCAAACGTTTGCCGTGCTCTTCCGCTGCTGTGCTGCGAAAAGTTGGTGTTGCAAGGCGCGCCGCAGCAAAGCCAAGGCTGAGAGCAAACCCACGTCGTGAACCCTTAAAAATACCCCCAAAAAAAAAGGAACAACCTCAAACCTCTGGAAGAAGGTACTCACCCCGTGCGCGCGTCTTTCGCTCAACGCGGCAGCATCCAGCCATCCGGACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAACACAGCAGCGCCCGTGTGCTTGTGCAAACCTGTGTGCCGCTGTGGCACCGCTGGGCGGCGGTGGGGTTTGGTGGTTGTATGCCCCGAGCGCAAAGGCCGGAAGGTGATGTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCAGCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGCGCCACCGGCGGTAGTGTTTCGGAGTGTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTTTCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCCCGTACGAGTGCCGTGTGTCTCTATGTGAA] [+] EMBL BX623725 [CCCCGGAGGAAAAAGCACACACGCACACCGTAGCCGCAGCCGCGTGGATTCGTCGACCATCGTTCGTGCCGCAACGACACTACGCAACGGCCGCAAACGTTTGCCGTGCTCTTCCGCTGCTGTGCTGCGAAAAGTTGGTGTTGCAAGGCGCGCCGCAGCAAAGCCAAGGCTGAGAGCAAACCCACGTCGTGAACCCTTAAAAATACCCCCAAAAAAAAAGGAACAACCTCAAACCTCTGGAAGAAGGTACTCACCCCGTGCGCGCGTCTTTCGCTCAACGCGGCAGCATCCAGCCATCCGGACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAACACAGCAGCGCCCGTGTGCTTGTGCAAACCTGTGTGCCGCTGTGGCACCGCTGGGCGGCGGTGGGGTTTGGTGGTTGTATGCCCCGAGCGCAAAGGCCGGAAGGTGATGTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCAGCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGCGCCACCGGCGGTAGTGTTTCGGAGTGTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTTTCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCCCGTACGAGTGCCGTGTGTCTCTATGTGAA] consensusID : consensus_2537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGCACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCCTGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGTGCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGCAAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAAACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAGCATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAACACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCACTGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTGTGATTGTGTGCGTTATGGTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNGGCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG] [+] EMBL AL931255 [AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGCACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCCTGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGTGCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGCAAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAAACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAGCATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAACACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCACTGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTGTGATTGTGTGCGTTATGGTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNGGCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2537#0 --------------------------------------------CCCCGGAGGAAAAAGC 16 consensus_2537#1 AGAATNTGNCCCGAGGATTTCGCACAGTGAACTGCAGCTGTAGCCCCCGGAGGAAAAAGC 60 **************** consensus_2537#0 ACACACGCACACCGTAGCC-GCAGCC-GCGTG-GATTCGTCGACCATCGTTCGTGCCGC- 72 consensus_2537#1 ACACACGCACACCGTAGCCTGCAGCCTGCGTGTGATTCGTCGACCATCGGTTCTGGTGCC 120 ******************* ****** ***** **************** * ** ** consensus_2537#0 ----AACGACACTACGCAACGG--CCGCAAAC-GTTTGCC-GTGCTCTTCC-GCTGCTGT 123 consensus_2537#1 TGCAAATGACACTACGCAACTGTGCCGCAAACTGTTTGCCTGTGCTCTTCCTGCTGCTGT 180 ** ************* * ******** ******* ********** ******** consensus_2537#0 GCTG--CGAAAAGTTGGTGTT-GCAAGGC-GCG--CCGCAGCAAAGCCAAGGCTGAGAGC 177 consensus_2537#1 GCTTGCTGAAAAGTTGGTGTTTGCAAGGCTGCTGCCTGCAGCAAAGCCAAGGCTGAGAGC 240 *** ************** ******* ** * *********************** consensus_2537#0 AAACCCAC-GTC-GTGAACCCTTAAAAATACCCCCAAAAAAAAAG---GAACAACCTCAA 232 consensus_2537#1 AAACCCACTGTCTGTGAACCCTTAAAAATACCCCCGAAAAAAAAATGTGAACAACCTCAA 300 ******** *** ********************** ******** ************ consensus_2537#0 ACCTCTG-GAAGAAGGTACTCACCCC-GTGC-GCGCGTCTTTCGCTCAAC---GCGGCAG 286 consensus_2537#1 ACCTCTGTGAAGAAGGTACTCACCCCTGTGCTGCGCGTCTTTCGCTCAACTGCGNGCCAG 360 ******* ****************** **** ****************** * * *** consensus_2537#0 CATCCAGCCATCCGG----ACAGGCCTGTATAGTAATTGACCTTTAGGGGGGACACAGAA 342 consensus_2537#1 CATCCAGCCATCCTGGTGCATGTGCCTGTATAGTAATTGACCTTTTGGGGGAACACAGAA 420 ************* * * ********************** ***** ******** consensus_2537#0 CACAGCAGCG--CCCGTGTGC-TTGTGCAAACCTGTGTGCCGC-----TGTG-GCACCGC 393 consensus_2537#1 CACAGCAGCTGCCCTGTGTGCGTTGTGCAAACCTTGTTGTTGCCTGCTTGTGTGCACCAC 480 ********* ** ****** ************ ** ** **** ***** * consensus_2537#0 TGGGC--GGCGGTGGGGTT-TGGTGGT-TGTAT-GCCCCGAGCGCAAAG-GCCGGAAG-G 446 consensus_2537#1 TGNGGCGNGCGGTGGGGTTCTGGTGGTCTGTATTGCCCCGAGCGCAAAGTGCCGGAAGTG 540 ** * *********** ******* ***** *************** ******** * consensus_2537#0 TGAT-GTGTGCGTTTATGGTTTCGGATGTGTCGCTGTTGGTAGTCGCTAGACGACGGGCA 505 consensus_2537#1 TGATTGTGTGCGTT-ATGGTT-CGGATGTGTCGCTGTTGGTAGTCGCTAGACTGCCTGNG 598 **** ********* ****** ****************************** * * consensus_2537#0 GCAGCAGTAGCAGCAGCCTCCCTTGGCAACGAGC-GCCACCGGCGGTAGTGTTTCGGAGT 564 consensus_2537#1 GCAGCAGCAGCAGCAGCTCCCTTGGNCAACGAGCTGCCACCGGCGGTNNTGTTTCGGAG- 657 ******* ********* ** * * ******** ************ ********** consensus_2537#0 GTTGGTTGGTGCGCCGCTCTATCCCCGAACCAAAAGGAAAAGGTTCTTTAAAGCCGCGTT 624 consensus_2537#1 ------------------------------------------------------------ consensus_2537#0 TCGGAAACTACTGAAATTGCCTGCACGCATTCGAGCCGCGACAAGAAAAAANGTGATCCC 684 consensus_2537#1 ------------------------------------------------------------ consensus_2537#0 CGTACGAGTGCCGTGTGTCTCTATGTGAA 713 consensus_2537#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||