cluster # 2540

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Anopheles gambiae
cluster # 2540 cluster # 2540 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2540#0 length = 654 sequences # 1

consensus_2540#1 length = 561 sequences # 1

consensusID : consensus_2540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATTTTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACACTATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTTTTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAACCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAAAATAATATAGAAACATGTTTATATTCGACTATTAGGAAATTGGCATGTTAATGTTAATTAACGTAAATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAAATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA]

[+] EMBL BX609374             [CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATTTTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACACTATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTTTTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAACCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAAAATAATATAGAAACATGTTTATATTCGACTATTAGGAAATTGGCATGTTAATGTTAATTAACGTAAATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAAATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA]




>consensus_2540#0
CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATT
TTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACAC
TATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTT
TTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAA
CCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAAT
CATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTA
GACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTT
TTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATAC
ATGGAAAAATACCATTTATTGAAAATAATATAGAAACATGTTTATATTCGACTATTAGGA
AATTGGCATGTTAATGTTAATTAACGTAAATCTTAGAACGTTCTTTACTGCAACAAAACG
TATACATTAAAATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA

consensusID : consensus_2540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence

                              [AAGAATCGCCCCGAGGATTATTTGCGTAAACATTTTTTTTTACAATATTCTGTCAATATATCCAAGTATCCCAATAGCATGGAGCAAAGCAAACAACCAAATGATAACGTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTGGTATTCATACAGAAGCTTCTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAGGAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAAACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA]

[+] EMBL AL931277             [AAGAATCGCCCCGAGGATTATTTGCGTAAACATTTTTTTTTACAATATTCTGTCAATATATCCAAGTATCCCAATAGCATGGAGCAAAGCAAACAACCAAATGATAACGTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTGGTATTCATACAGAAGCTTCTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAGGAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAAACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA]




>consensus_2540#1
AAGAATCGCCCCGAGGATTATTTGCGTAAACATTTTTTTTTACAATATTCTGTCAATATA
TCCAAGTATCCCAATAGCATGGAGCAAAGCAAACAACCAAATGATAACGTGTTACCATTT
TTGAATTCATATCCTTTTACAAAGCAAATCACAATCATAATCGTTTATCTAGAAAATAAA
TAAAAATAATAAGAGTAACGTACCATGTGACGGTAGACGCTGTGGTATTCATACAGAAGC
TTCTTTGGTACGAAGCATATTATACTTTCGTTTTTATATCATAGTTTTTTGCAAACACAT
AGCAAAGCAGGAGTATAACTAACCTTTGAATACATGGAAAAATACCATTTATTGAACAAT
AATATAGAAACATGTTTACTATTCGACTATTAGGAAATTGGCCATGTTAATGTTAATTAA
CGTAACATCTTAGAACGTTCTTTACTGCAACAAAACGTATACATTAAACATATATTCATA
ATAGAACCAAGGACATTACTAACAACTGACGAAACCTGTCTATAGAATTATCAAGGAACN
TTTGCAAATTCATGAACAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2540#0      CTACTAATGCGTTATACCAATGGTAATGGTTCAACCGTTACAACATGACCAATTTCAATT 60
consensus_2540#1      ------------------------------------------------------------
                                                                                  

consensus_2540#0      TTTATACCATTTATTGATACAAATCTTTCAATATCGCTGGGTAGACCTAACAGCTAACAC 120
consensus_2540#1      ------------------------------------------------------------
                                                                                  

consensus_2540#0      TATATTCTGAAAGTCAAGAACGTTTGATCGTCGAAATTTATTTTGCGTAAACATTTTTTT 180
consensus_2540#1      ------------------AAGAATCGCCC--CGAGGATTATTT-GCGTAAACATTTTTTT 39
                                        **   * *  *  ***   ****** ****************

consensus_2540#0      TTTACAATATTCTGTTCAATATATCCAAGTATCCCAATAGCATTGGAGCAAAGCAAACAA 240
consensus_2540#1      TT-ACAATATTCTGT-CAATATATCCAAGTATCCCAATAGCAT-GGAGCAAAGCAAACAA 96
                      ** ************ *************************** ****************

consensus_2540#0      CCAAATGATAACGTTGTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAAT 300
consensus_2540#1      CCAAATGATAACGT-GTTACCATTTTTGAATTCATATCCTTTTACAAAGCAAATCACAAT 155
                      ************** *********************************************

consensus_2540#0      CATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTA 360
consensus_2540#1      CATAATCGTTTATCTAGAAAATAAATAAAAATAATAAGAGTAACGTACCATGTGACGGTA 215
                      ************************************************************

consensus_2540#0      GACGCTGTTGGTATTCATACAGAAGCTTCTTTTGGTACGAAGCATATTATACTTTCGTTT 420
consensus_2540#1      GACGCTGT-GGTATTCATACAGAAGCTTCTTT-GGTACGAAGCATATTATACTTTCGTTT 273
                      ******** *********************** ***************************

consensus_2540#0      TTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATAC 480
consensus_2540#1      TTATATCATAGTTTTTTGCAAACACATAGCAAAGCAGGAGTATAACTAACCTTTGAATAC 333
                      ************************************************************

consensus_2540#0      ATGGAAAAATACCATTTATTGAA-AATAATATAGAAACATGTTTA-TATTCGACTATTAG 538
consensus_2540#1      ATGGAAAAATACCATTTATTGAACAATAATATAGAAACATGTTTACTATTCGACTATTAG 393
                      *********************** ********************* **************

consensus_2540#0      GAAATTGGC-ATGTTAATGTTAATTAACGTAA-ATCTTAGAACGTTCTTTACTGCAACAA 596
consensus_2540#1      GAAATTGGCCATGTTAATGTTAATTAACGTAACATCTTAGAACGTTCTTTACTGCAACAA 453
                      ********* ********************** ***************************

consensus_2540#0      AACGTATACATTAAA-ATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGA- 654
consensus_2540#1      AACGTATACATTAAACATATATTCATAATAGAACCAAGGACATTACTAACAACTGACGAA 513
                      *************** ******************************************* 

consensus_2540#0      ------------------------------------------------
consensus_2540#1      ACCTGTCTATAGAATTATCAAGGAACNTTTGCAAATTCATGAACAACA 561