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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[TGGCTCGAGGCCAAGAATCCNGCACGANTGAAAGTCATAGGGGCTTGCTTTTGCNAAAGTGGTTCTGGAACAAAAAAACAACNAAAACAAAACAAACACAACAAGAGCACTCTGTGCCAGCACACTGTAGCCACCTAGGTACCAGTGTGCAGCATTGAAGCAAGAGTTAGTAAGATCAAAAGTTTTGCAGGGGAAAGTAGAAAACCTATAACAAAAACCAGTTTAAAATAAATCAAACCACAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTGATGCAAANAGAGTCAGTAAACGAGTAACAGCACAAACAACAACACACCACAGGAAGNANACAGCTGCTGCTCATGCTGCTGCTACTGCTGTAGATGTACTGNGTACTACACAGGTTCACCGGTTCANTTNAGNTTCACCTTAACAGGAAGTCCAACGGCCCAAATTGGGGACAACGGCTATNCACTANTAGCANTTACACAAATCTTCTAAGATAGCAAAACNACGCNACACAGAAGGCCCCCCAAAGTGGTTGNCCNNGGTAACTCATAACAGACAATTANTTGGACTTCTACACCGNTGGGGAAACACACTTGCAAAAGGTGCCAGGAATACACACGGTTGTTGACCAAGCGAANTTNTACNTCATCNCCGTTCCAAGGCTATGGGATCCAACA]
[+] EMBL BX467213 [TGGCTCGAGGCCAAGAATCCNGCACGANTGAAAGTCATAGGGGCTTGCTTTTGCNAAAGTGGTTCTGGAACAAAAAAACAACNAAAACAAAACAAACACAACAAGAGCACTCTGTGCCAGCACACTGTAGCCACCTAGGTACCAGTGTGCAGCATTGAAGCAAGAGTTAGTAAGATCAAAAGTTTTGCAGGGGAAAGTAGAAAACCTATAACAAAAACCAGTTTAAAATAAATCAAACCACAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTGATGCAAANAGAGTCAGTAAACGAGTAACAGCACAAACAACAACACACCACAGGAAGNANACAGCTGCTGCTCATGCTGCTGCTACTGCTGTAGATGTACTGNGTACTACACAGGTTCACCGGTTCANTTNAGNTTCACCTTAACAGGAAGTCCAACGGCCCAAATTGGGGACAACGGCTATNCACTANTAGCANTTACACAAATCTTCTAAGATAGCAAAACNACGCNACACAGAAGGCCCCCCAAAGTGGTTGNCCNNGGTAACTCATAACAGACAATTANTTGGACTTCTACACCGNTGGGGAAACACACTTGCAAAAGGTGCCAGGAATACACACGGTTGTTGACCAAGCGAANTTNTACNTCATCNCCGTTCCAAGGCTATGGGATCCAACA]
consensusID : consensus_255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[TAGCCACCAGGACCAGGTGCAGCATGCAAGAAGAGTTAGTAAGATCAAAAGTTTGCAGGGAAAGTAGAAAACCTATAACAAAACAGTTTAAAATAATCAAACCACAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTAATGCAAAAGAGTAGTAAACGAGAACAGAAAACAACAACACACCACAGGAAGAAAAGCTGCAGCTGCTGCTGCTGCTGCTGTAGTGTGCTGCGTACTACACAGTAAGTTAATAGTTACTAAGAGTCACGCAATGGAACGCTTTTTTGCATACAATTTAAACAAAACAAAAGCCCAATGTGCTGTTTTAAGCATATGATTACGTGGAAAATGAAGGCAGAAAAGTGTGCAGCTTCTCTCCTCCAGTTGGTCAAGATCAATACGCTCGCAAACCGGAGAGAGAGAGAGCAGAAGTATCGTCATACAACAAGATATAAGCAAGCAAAGCAAAAAGCATTAATTAAGTAATTATTAGCAAAACAAAAAACATTTAAACATAAGCTAAATATGGAAACACTACTTCTACGGGAACTGCAGAGAGAGGGAGAGGAACGGATTAAGGGGAAAAAGCAGCGTTTGTGAAACATAAAAAGGGGGGTTTGGGTGAAAGGCGCTATTTAATAAAATTTAACTA]
[+] EMBL BX616115 [TAGCCACCAGGACCAGGTGCAGCATGCAAGAAGAGTTAGTAAGATCAAAAGTTTGCAGGGAAAGTAGAAAACCTATAACAAAACAGTTTAAAATAATCAAACCACAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTAATGCAAAAGAGTAGTAAACGAGAACAGAAAACAACAACACACCACAGGAAGAAAAGCTGCAGCTGCTGCTGCTGCTGCTGTAGTGTGCTGCGTACTACACAGTAAGTTAATAGTTACTAAGAGTCACGCAATGGAACGCTTTTTTGCATACAATTTAAACAAAACAAAAGCCCAATGTGCTGTTTTAAGCATATGATTACGTGGAAAATGAAGGCAGAAAAGTGTGCAGCTTCTCTCCTCCAGTTGGTCAAGATCAATACGCTCGCAAACCGGAGAGAGAGAGAGCAGAAGTATCGTCATACAACAAGATATAAGCAAGCAAAGCAAAAAGCATTAATTAAGTAATTATTAGCAAAACAAAAAACATTTAAACATAAGCTAAATATGGAAACACTACTTCTACGGGAACTGCAGAGAGAGGGAGAGGAACGGATTAAGGGGAAAAAGCAGCGTTTGTGAAACATAAAAAGGGGGGTTTGGGTGAAAGGCGCTATTTAATAAAATTTAACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_255#0 TGGCTCGAGGCCAAGAATCCNGCACGANTGAAAGTCATAGGGGCTTGCTTTTGCNAAAGT 60
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GGTTCTGGAACAAAAAAACAACNAAAACAAAACAAACACAACAAGAGCACTCTGTGCCAG 120
consensus_255#1 ------------------------------------------------------------
consensus_255#0 CACACTGTAGCCACCTAGGTACCAGTGTGCAGCATTGAAGCAAGAGTTAGTAAGATCAAA 180
consensus_255#1 -------TAGCCACCAGG--ACCAG-GTGCAGCATGCAAG-AAGAGTTAGTAAGATCAAA 49
******** * ***** ********* *** *******************
consensus_255#0 AGTTTTGCAGGGGAAAGTAGAAAACCTATAACAAAAACCAGTTTAAAATAAATCAAACCA 240
consensus_255#1 AGTTT-GCAGGG-AAAGTAGAAAACCTATAACAAAA--CAGTTTAAAATAA-TCAAACCA 104
***** ****** *********************** ************* ********
consensus_255#0 CAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTGATGCAAANAGAGTCAGTAAACG 300
consensus_255#1 CAATAAATGCTAAAGAAGCAAAAGACGAGAAGCGAGTAATGCAAAA-GAGT-AGTAAACG 162
************************************* ******* **** ********
consensus_255#0 AGTAACAGCACAAACAACAACACACCACAGGAAGNANACAGCTGCTGCTCATGCTGCTGC 360
consensus_255#1 AG-AACAGAA--AACAACAACACACCACAGGAAGAAA--AGCTGCAGCT---GCTGCTGC 214
** ***** * ********************** * ****** *** ********
consensus_255#0 TACTGCTGTAGATGTACTGNGTACTACACAG--GTTCACCGGTTCANTTNAGNTTCACCT 418
consensus_255#1 TGCTGCTGTAG-TGTGCTGCGTACTACACAGTAAGTTAATAGTT--ACTAAGAGTCACGC 271
* ********* *** *** *********** * * *** * ** ****
consensus_255#0 TAACAGGAAGTCCAACGGCCCAAATTGGGGACAACGGCTATNCACTANTAGCANTTACAC 478
consensus_255#1 -AATGGAACGCTTTTTTGCATACAATTTAAACAAAACAAAAGCCCAATGTGCTGTTTTAA 330
** * * * ** * * * **** * * * * ** ** *
consensus_255#0 AAATCTTCTAAGATAGCAAAACNACGCNACACAGAAGGC--------CCCCCAAAGTGGT 530
consensus_255#1 GCATATGATTACGTGGAAAATGAAGGCAGAAAAGTGTGCAGCTTCTCTCCTCCAGTTGGT 390
** * * * * * *** * ** * ** ** ** * * ****
consensus_255#0 TGNCCNNGGTA-ACTCATAA-CAGACAATTANTTGGACTTCTACACCGNTGGGGAA--AC 586
consensus_255#1 CAAGATCAATACGCTCGCAAACCGGAGAGAGAGAGAGCAGAAGTATCGTCATACAACAAG 450
** *** ** * * * * * * ** ** *
consensus_255#0 ACACTTGCAAAAGGTGCCAGGAATAC-----ACACGGTTGTTGACCAAGCGAAN-----T 636
consensus_255#1 ATATAAGCAAGCAAAGCAAAAAGCATTAATTAAGTAATTATTAGCAAAACAAAAAACATT 510
* * **** ** * * * * ** ** * ** * ** *
consensus_255#0 TNTACNTCATCNCCGTTCCAAGGC--------TATGGGATCCAACA-------------- 674
consensus_255#1 TAAACATAAGCTAAATATGGAAACACTACTTCTACGGGAACTGCAGAGAGAGGGAGAGGA 570
* ** * * * * * * ** **** *
consensus_255#0 ------------------------------------------------------------
consensus_255#1 ACGGATTAAGGGGAAAAAGCAGCGTTTGTGAAACATAAAAAGGGGGGTTTGGGTGAAAGG 630
consensus_255#0 -----------------------
consensus_255#1 CGCTATTTAATAAAATTTAACTA 653
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||