These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2555#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCGAGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCAGCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCAGCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCACTATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACTTGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCTTCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACATACTAAAAGCAACATCCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGG] [+] EMBL BM600529 [CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCGAGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCAGCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCAGCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCACTATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACTTGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCTTCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACATACTAAAAGCAACATCCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGG] consensusID : consensus_2555#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [CCGGCGGCGGATAAGTGACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTCTTTCTTCCTCTTGCGCTAGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACACATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATACGGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACGTGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTAGGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC] [+] EMBL BM593961 [CCGGCGGCGGATAAGTGACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTCTTTCTTCCTCTTGCGCTAGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAACGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCGAAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACACACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCAGCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAGACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACACATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATACGGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACGTGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTAGGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2555#0 CCGTCTTTCTGTTCTCCCGGTCGCAGCCCCCCCAGCTTCCGTCTCGTACCGATTTCTTCG 60 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 AGCGATCGAAGAAGCAAGCGCATACTAGGGACAACAGTATAGGCAGCAGCAGCAGCAGCA 120 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 GCAGCGAGCGAGGAAGCAGCAACGGAACGAGCAGCGACGACGTACGGTTTGCGCTGACCA 180 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 GCAGCAGCACAGACACACTAGCAGCTGCCCAACACGCACGGTGGCAACGGTGGCCCGCAC 240 consensus_2555#1 ------------------------------------------------------------ consensus_2555#0 TATCACATCACCACCATCACCACCACTACTACTACTATTACTACCACTACTACAGCTACT 300 consensus_2555#1 ---------------------------------------------CCGGCGGCGGATAAG 15 * * * * ** consensus_2555#0 TGCCGCAGTACATCGGTGCGATTGGCGCACGCGGTGGATGCCGTACGTTTGACGTACTCT 360 consensus_2555#1 TG--ACTGAATAGTGTCCCCGGTGGTGGAATGACTTTATTCTCTCTCTCTC-TTTCTTCC 72 ** * * * * * * *** * * * ** * * * * * ** consensus_2555#0 TCAAACATTCATGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAA 420 consensus_2555#1 TCTTGCGCT--AGAGTTTTCAACTAACGCACGCAACAATGGAGTTTGGCTAGGAAAGGAA 130 ** * * ************************************************ consensus_2555#0 CGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCG 480 consensus_2555#1 CGTCGTCAGTGATCTGCGCTTCAGGTGAAACAAATCTCGTACCAAGAGAGACAGAGAGCG 190 ************************************************************ consensus_2555#0 AAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAAACACACACATACA 540 consensus_2555#1 AAAGAGCGCGAGAGAGCGAGCGAAGGCAAATGTAGTTGACACATCAGACACACACATACA 250 ********************************************** ************* consensus_2555#0 CACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCA 600 consensus_2555#1 CACAGATCCACACTGACGCACGTGTGGCCGAACTCCAGTAACACAGCAACAACAACAGCA 310 ************************************************************ consensus_2555#0 GCAGCAGCAGCAAAAAGAAACA-TACTAAAAGCAACATCCGAAAGCGAATACTACTGCAG 659 consensus_2555#1 GCAGCAGCAGCAAAAAGAAACAATACTAAAAGCAACAACCGAAAGCGAATACTACTGCAG 370 ********************** ************** ********************** consensus_2555#0 ACACCTATACACAACCTACTGG-------------------------------------- 681 consensus_2555#1 ACACCTATACACAACCTACTGGGAAGCAGAGCAGCTAAACCAGGCAACAACCGTCACACA 430 ********************** consensus_2555#0 ------------------------------------------------------------ consensus_2555#1 CATATACACAAACACATACCGTCTGGAGGCGCTTCCGAAACCATATCCACAATCCAATAC 490 consensus_2555#0 ------------------------------------------------------------ consensus_2555#1 GGGTATTGTTCCCCATTCATCCGTTTTGCATTTGTCAACCACGCATCACCACGCTCGACG 550 consensus_2555#0 ------------------------------------------------------------ consensus_2555#1 TGCGGACACTGCCGGTCAAGCGGTAAAGTGTAGGTGTGTGTAAGGAAAGCATCGGCGCTA 610 consensus_2555#0 --------------------------------------------------------- consensus_2555#1 GGACAGAGAAAGCGAGAACGAGCGTACAGCACGACGCCTAGTATTACGGCAGCGCAC 667 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||