These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGCGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTTGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCTTTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCTCCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGTGTGTATGTGTGTGTGTGTGTGTGTG] [+] EMBL AL931596 [CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGCGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTTGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCTTTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCTCCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGTGTGTATGTGTGTGTGTGTGTGTGTG] consensusID : consensus_2564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC] [+] EMBL BX468484 [AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2564#0 CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGC-GACAAAAAACAAACTCCCCACGCGT 59 consensus_2564#1 ----AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGT 56 ** * * * * ********* ************************* consensus_2564#0 AGGCTTCAACACGAATT-GATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGA 118 consensus_2564#1 AGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGA 116 ***************** ****************************************** consensus_2564#0 AAGCAT-GTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTT 177 consensus_2564#1 AAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTT 176 ****** ********************************************** ** *** consensus_2564#0 -ATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATA 236 consensus_2564#1 TATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATA 236 *********************************************************** consensus_2564#0 AGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTT--GGGTTCTTTTAAATCTGTTC 294 consensus_2564#1 AGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTC 296 *********************************** ** ******************** consensus_2564#0 GCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTT- 353 consensus_2564#1 GCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTT 356 *********************************************************** consensus_2564#0 GTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCT 413 consensus_2564#1 GTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC-------- 408 **************************************************** consensus_2564#0 TTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCT 473 consensus_2564#1 ------------------------------------------------------------ consensus_2564#0 CCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGT 533 consensus_2564#1 ------------------------------------------------------------ consensus_2564#0 GTGTATGTGTGTGTGTGTGTGTGTG 558 consensus_2564#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||