These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TCGCGTTCTTCCTTAGCTCGTACGTGGTCCCGCTCATACTGATCAGCGTCCTGTACATGTGGATGTTGTCCCGGCTGTGGCGAAGTTCGGTCGGCGGTCGTTCGGCCGAATCGAAGAAGGGCAAAAAGCGCGTTACCCGGCTGGTGGTGATTGTGGTGGCAGCGTTTGCTTCATTATGGTTTCCCATACAGGTCATCCTGGTGCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCATTTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAACCCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTACTGTGGACCGGGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACGACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTCACCTTCGTTTAATACACTCTTTGTTTTTGCACAGTGCAGCCCAGAGTCTCCTTGTTATCCTGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGGGCTTAACAGTGCTGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATCTTTATTATGAGTGGTAGTAATTAACAGATCGTTT] [+] EMBL BX620556 [TCGCGTTCTTCCTTAGCTCGTACGTGGTCCCGCTCATACTGATCAGCGTCCTGTACATGTGGATGTTGTCCCGGCTGTGGCGAAGTTCGGTCGGCGGTCGTTCGGCCGAATCGAAGAAGGGCAAAAAGCGCGTTACCCGGCTGGTGGTGATTGTGGTGGCAGCGTTTGCTTCATTATGGTTTCCCATACAGGTCATCCTGGTGCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCATTTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAACCCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTACTGTGGACCGGGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACGACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTCACCTTCGTTTAATACACTCTTTGTTTTTGCACAGTGCAGCCCAGAGTCTCCTTGTTATCCTGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGGGCTTAACAGTGCTGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATCTTTATTATGAGTGGTAGTAATTAACAGATCGTTT] consensusID : consensus_2586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [ATGGGAAGACAACTTCTCTGTTTGACTTTCTTTTCATTAATTTTCTCTCATTCTATTTCATGTTTTCAGGTCATCCTGGTCCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCATTTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAACCCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTACTGTGGACCGAGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACGACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTCACCTTCGTTTAATACACTCTTTGTTTTCGCACAGTGCAGCCCAGTGTATCCGTTTTATCCTGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGGGCTTAACAGTGATGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATCTTTATTATGAGTGGTAGTAATTAACAGATCGTGTGGTACCGTATGGTGCGTTTATCATAATGGACAATGTCCTACTTTATTAAATTTCATCTACGTTATATGAGGGTGCGCTTGATCGT] [+] EMBL BX622376 [ATGGGAAGACAACTTCTCTGTTTGACTTTCTTTTCATTAATTTTCTCTCATTCTATTTCATGTTTTCAGGTCATCCTGGTCCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCATTTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAACCCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTACTGTGGACCGAGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACGACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTCACCTTCGTTTAATACACTCTTTGTTTTCGCACAGTGCAGCCCAGTGTATCCGTTTTATCCTGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGGGCTTAACAGTGATGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATCTTTATTATGAGTGGTAGTAATTAACAGATCGTGTGGTACCGTATGGTGCGTTTATCATAATGGACAATGTCCTACTTTATTAAATTTCATCTACGTTATATGAGGGTGCGCTTGATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2586#0 TCGCGTTCTTCCTTAGCTCGTACGTGGTCCCGCTCATACTGATCAGCGTCCTGTACATGT 60 consensus_2586#1 ------------------------------------------------------------ consensus_2586#0 GGATGTTGTCCCGGCTGTGGCGAAGTTCGGTCGGCGGTCGTTCGGCCGAATCGAAGAAGG 120 consensus_2586#1 --------------------------------------------------------ATGG 4 * ** consensus_2586#0 GCAAAAAGCGCGTTACCCGGCTGGTGGTGATTGTGGTGGCAGCGTTTGCTTCATTATGGT 180 consensus_2586#1 GAAGACAAC---TTCTCTGTTTGACTTTCTTTTCATTAAT----TTTCTCTCATTCTATT 57 * * * * * ** * * ** * ** * *** ***** * * consensus_2586#0 TTCC-CATACAGGTCATCCTGGTGCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCAT 239 consensus_2586#1 TCATGTTTTCAGGTCATCCTGGTCCTAAAGAGTGTGGACGTCTTTAAACCAGACACGCAT 117 * * ************** ************************************ consensus_2586#0 TTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAAC 299 consensus_2586#1 TTTAAAATTTCACTACAAATCGTCTCGCACGTGCTGGCATACACGAGCTCCTGTATAAAC 177 ************************************************************ consensus_2586#0 CCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTAC 359 consensus_2586#1 CCGCTGCTGTACGCGTTCCTGTCCGAAAACTTTCGGAAAGCATTCCGTAAGATTGTTTAC 237 ************************************************************ consensus_2586#0 TGTGGACCGGGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACG 419 consensus_2586#1 TGTGGACCGAGGAGCCGTCGCCAGGGCAGCCAGCGACATATGCCACTGCCAACGAAAACG 297 ********* ************************************************** consensus_2586#0 ACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTC 479 consensus_2586#1 ACGCGAACCGGCAGCTGTCCAGACATTTTATAACCGGAAACAATGGAGGAAACGTCCGTC 357 ************************************************************ consensus_2586#0 ACCTTCGTTTAATACACTCTTTGTTTTTGCACAGTGCAGCCCAGAGTCTCCTTGTTATCC 539 consensus_2586#1 ACCTTCGTTTAATACACTCTTTGTTTTCGCACAGTGCAGCCCAGTGTATCCGTTTTATCC 417 *************************** **************** ** *** * ****** consensus_2586#0 TGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGG 599 consensus_2586#1 TGTCCTCGACAGATCATCAGCACAGCGGCACAAGCTTCTACGAAACGTTTCACTCCAAGG 477 ************************************************************ consensus_2586#0 GCTTAACAGTGCTGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATC 659 consensus_2586#1 GCTTAACAGTGATGCATACCGAACCAACCAATCGTTATCATGATCACTCTCATCATCATC 537 *********** ************************************************ consensus_2586#0 TTTATTATGAGTGGTAGTAATTAACAGATCGTTT-------------------------- 693 consensus_2586#1 TTTATTATGAGTGGTAGTAATTAACAGATCGTGTGGTACCGTATGGTGCGTTTATCATAA 597 ******************************** * consensus_2586#0 ----------------------------------------------------------- consensus_2586#1 TGGACAATGTCCTACTTTATTAAATTTCATCTACGTTATATGAGGGTGCGCTTGATCGT 656 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||