cluster # 2590

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Anopheles gambiae
cluster # 2590 cluster # 2590 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2590#0 length = 620 sequences # 1

consensus_2590#1 length = 556 sequences # 1

consensusID : consensus_2590#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGGGTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATGTCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTATTTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGATTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATCGAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGAAGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAATCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCAATTATGGTTAAAAACAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATTATAGGTATAAAGCTACAGTATAGC]

[+] EMBL BM653342             [CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGGGTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATGTCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTATTTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGATTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATCGAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGAAGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAATCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCAATTATGGTTAAAAACAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATTATAGGTATAAAGCTACAGTATAGC]




>consensus_2590#0
CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGG
GTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATG
TCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTAT
TTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGA
TTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATC
GAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGA
AGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAA
TCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTA
AAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCA
ATTATGGTTAAAAACAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATTATAG
GTATAAAGCTACAGTATAGC

consensusID : consensus_2590#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [TATGGCGAGTCAGTAGTGACACTCGTCATGTGATTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATCGAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAAAACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAATCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCGATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATTATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAACGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCGAGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG]

[-] EMBL BX616632             [TATGGCGAGTCAGTAGTGACACTCGTCATGTGATTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATCGAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAAAACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAATCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCGATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATTATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAACGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCGAGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG]




>consensus_2590#1
TATGGCGAGTCAGTAGTGACACTCGTCATGTGATTCGATTTTGCACAGAATTCTACCCAA
CAATTATTCGTTCGACTGTTTGCACCAACAATCGAAAAGGAGTATTAATCCTACACTTTA
AAATAGAGAAGTGAATAGAAATTCTATTCTAAAAACATTTTCAAAAACTAAGCTAAAACT
ATTCATATAACACTCAAATGTATGCGGGTTAAATCTTCCAAAATTAAATGCTAAACTCAA
AAAAATCTATTCTTCTAATCGCTTACATGCTTAAAATGATATTCTACTTATCGCTTCCGG
AGGAGTTAAACGCAGCATGAAAAATAAACTTCGATTGTGGTTAAAAAACAACACAGCAAA
CTGTGCGCGCAAATGAAAAAAGGAAATCAAATTATAGCTATAAAGCTACAGTATAGCCGC
TCAACTTAGGCCTATATAAAACTTAACGCCTAACGCCAAACATTTGGTAGTGTTTGCCCT
GCCCTCGCTACATCGTGAGACTGTGCATATCCGAGTGGATTTCTCCGATCTTCTTCATCT
TCAGCAAATCGTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2590#0      CTTCGTTCCTTTATTAACAGCAACGTAGCACTCTTCTATCTCACTGCATCATTTACTGGG 60
consensus_2590#1      ------------------------------------------------------------
                                                                                  

consensus_2590#0      GTTAAACATAGTTCCCTAGTACTTAATGTTCATGTATCAATATCGTACATGTCTTTGATG 120
consensus_2590#1      ------------------------------------------------------------
                                                                                  

consensus_2590#0      TCTACACTCTGTAAATATTCTCATATATCTACACATTTATTATGCGTGGCCATAAACTAT 180
consensus_2590#1      ------------------------------------------------------------
                                                                                  

consensus_2590#0      TTGCCAAACCGAAACGTTTTTCTGTTGGTTTACTAAAGCGAGTCATTACTCGTCATGTGA 240
consensus_2590#1      --------------------TATGGCGAGTCAGT--AGTGA-----CACTCGTCATGTGA 33
                                          * **  *  * * *  ** **      *************

consensus_2590#0      TTCGATTTTGCACAGAATTCTACACAACAATTATTCGTTCGACTGTTTGCACCAATAATC 300
consensus_2590#1      TTCGATTTTGCACAGAATTCTACCCAACAATTATTCGTTCGACTGTTTGCACCAACAATC 93
                      *********************** ******************************* ****

consensus_2590#0      GAAAAGGATTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTACTCTAGA 360
consensus_2590#1      GAAAAGGAGTATTAATCCTACACTTTAAAATAGAGAAGTGAATAGAAATTCTATTCTAAA 153
                      ******** ******************************************** **** *

consensus_2590#0      AGCTTCTTCAAAAACTAAGCTAACACTATTCATATAACACTCAAATGTCTGTGTGTTAAA 420
consensus_2590#1      AACATTTTCAAAAACTAAGCTAAAACTATTCATATAACACTCAAATGTATGCGGGTTAAA 213
                      * * * ***************** ************************ ** * ******

consensus_2590#0      TCTTCCAAAATTATATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTA 480
consensus_2590#1      TCTTCCAAAATTAAATGCTAAACTCAAAAAAATCTATTCTTCTAATCGCTTACATGCTTA 273
                      ************* **********************************************

consensus_2590#0      AAATGATATTCTACATATCGCTTCCGGAGGAGTGAAACGCAGCATGAAAAATGAACTTCA 540
consensus_2590#1      AAATGATATTCTACTTATCGCTTCCGGAGGAGTTAAACGCAGCATGAAAAATAAACTTCG 333
                      ************** ****************** ****************** ****** 

consensus_2590#0      ATTATGGTTAAAAA----CAAAGCAAACTGTACGCGCAAATGGAAAACTGAAATCAAATT 596
consensus_2590#1      ATTGTGGTTAAAAAACAACACAGCAAACTGTGCGCGCAAATGAAAAAAGGAAATCAAATT 393
                      *** **********    ** ********** ********** ****  ***********

consensus_2590#0      ATAGGTATAAAGCTACAGTATAGC------------------------------------ 620
consensus_2590#1      ATAGCTATAAAGCTACAGTATAGCCGCTCAACTTAGGCCTATATAAAACTTAACGCCTAA 453
                      **** *******************                                    

consensus_2590#0      ------------------------------------------------------------
consensus_2590#1      CGCCAAACATTTGGTAGTGTTTGCCCTGCCCTCGCTACATCGTGAGACTGTGCATATCCG 513
                                                                                  

consensus_2590#0      -------------------------------------------
consensus_2590#1      AGTGGATTTCTCCGATCTTCTTCATCTTCAGCAAATCGTTCAG 556