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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA]
[+] EMBL BX611356 [CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGGACTGCTAGGGAGCTGTGTTTCTACAACGTTCCGCAAAACGACATGTATGATTAATTTATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGTTTCCGGAACGATTAACCTCCTTTGCAGACACCCACTGTTGGATAAAGTTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGTGCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAATGGAAACGCAACGTCGATCA]
consensusID : consensus_2593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG]
[+] EMBL BX605265 [AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTGATAACTGAGTAGCTTCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACGTACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTATTTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGTTAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCCATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAATGTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTATGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTGGCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATTCATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACGTATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2593#0 -----------CGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 49
consensus_2593#1 AGAAGAACGTGCGACTTTTGTAGATCTTACCAGAAGCATAGATTGTTGGATGAAAGGCTG 60
*************************************************
consensus_2593#0 ATAACTGCCCATGTTGGTGCTATCGGCGCGTTTCAAACTCTTCAACTGGT--CACCAATT 107
consensus_2593#1 ATAACTGAGTAGCT---TCCAATTGCCGTGCATCACTCCAATCAAAGGGAAGCATTTACG 117
******* * * * * ** * ** * *** * **** ** ** *
consensus_2593#0 GATGAGATAAATGTTAAAGGATT-----GTGAGTGGACTGCTAGGGAGCTG------TGT 156
consensus_2593#1 TACTACGTACGTGTTAGCTGATTATCCTGTGTTACAAATCTTTACACGCTGCAAAATTAT 177
* * ** ***** **** *** * * * **** * *
consensus_2593#0 TTCTACAACGTT-----CCGCAAAACGACATG------------TATGATTAATTT---- 195
consensus_2593#1 TTTAGCCATGTCATTGGTCACAGCAGGGCAGGGAATCCGATCGTTGTGATTATTCTCAGT 237
** * * ** * ** * * ** * * ****** * *
consensus_2593#0 --ATGAGGCGTGGTAAATTGCGAAAGTCGGCTCCATTCTCGGGTATGATCGGGAGCAGT- 252
consensus_2593#1 TAACCAGTTGAAAAAAACATTAAAAGTTTTTTTATCTTTGTTGCCACAACAACAATTGCC 297
* ** * *** ***** * * * * * * * *
consensus_2593#0 -TTCCGGAACGAT----------TAACCTCCTTTGCAGA-CACCCACTGTTG-GATAAA- 298
consensus_2593#1 ATGTTGGTGCGATAGGCGCGTTTCAAACTCTTCAACTGGTCACCAATTGATGAGATAAAT 357
* ** **** ** *** * * * **** * ** ** ******
consensus_2593#0 GTT----------------TCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 342
consensus_2593#1 GTTAAAGGATTGTGAGTGTTCCATGGAAGTATTGTACTGGATTCTACGACTGTTCGGGTA 417
*** *****************************************
consensus_2593#0 TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 402
consensus_2593#1 TGCTCCGTTCCGGCTACAGTTGGATGCAGACACACCTGACCGGGATGCATTCGGAACCTG 477
************************************************************
consensus_2593#0 GCGGACGAAACTATACACCATATCTTTCGGATTGGCATATACACTAGCTTTTATAAAATT 462
consensus_2593#1 GCGGACGAAACTATACACCATATCTTTCGGATTGGTATATACACTAGCTTTTATAAAATT 537
*********************************** ************************
consensus_2593#0 CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 522
consensus_2593#1 CATGTCCGAGCTAAAACACACCGGGTTCTCTGCATCGATGATCGAGGGCAAAGGCGAACG 597
************************************************************
consensus_2593#0 TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGGTTATGCTGT 582
consensus_2593#1 TATGTATTTTACTTTCAATTTTTTCACCACCATGTATGGAGTTGTGAACGG--------- 648
***************************************************
consensus_2593#0 GCGAGACAAAATTGAAAAATGCTCTACAAGCTGCATGCCGTGGATCAAAAGATAAGCCAA 642
consensus_2593#1 ------------------------------------------------------------
consensus_2593#0 TGGAAACGCAACGTCGATCA 662
consensus_2593#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||