These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence [GGCAAGAATCGGCACGATGGGTGCAGTCTACTTCCTTGTGCTGTTTGTGGAATCGTAACAAACAACAAAACACACATTTCAAAATGAAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAGCAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTAGCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGACGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACTCGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATGGGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGGCCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGTAAGATGAACGTCTAATGTAGGATAAGTTTAGCTCGATTTGCGTTAGCCATCGTTGTTATGTTGTAGTTGTGTATAGACTGAAATAAAGATAAACGTACCCAATGTTATTACCAGCAAAAGTAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAAAAAACACAAACAAAAACAAACAACAAAAACA] [+] EMBL BX467986 [GGCAAGAATCGGCACGATGGGTGCAGTCTACTTCCTTGTGCTGTTTGTGGAATCGTAACAAACAACAAAACACACATTTCAAAATGAAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAGCAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTAGCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGACGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACTCGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATGGGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGGCCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGTAAGATGAACGTCTAATGTAGGATAAGTTTAGCTCGATTTGCGTTAGCCATCGTTGTTATGTTGTAGTTGTGTATAGACTGAAATAAAGATAAACGTACCCAATGTTATTACCAGCAAAAGTAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAAAAAACACAAACAAAAACAAACAACAAAAACA] consensusID : consensus_2595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CCGGTGGCAAGTGCGAAGAGAACACGCATTTAACTTCCGTTCAATTCTGACAACCGAAACTTGTTGCTTGCTTGCAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAGCAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTAGCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGACGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACTCGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATGGGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGGCCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGTAAGATGAACGTCTAATGTAGGATAATTTAGCTCGATTTGCGTTAGCCATCGTTGTTTGTTGTGTTGTGTATAGACTGAAATAAAATAAACGTACCCAATGTTATTACCAGCAAAAGTAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAACATTTACGTCGGCAATTTGCCATGCTCTCAAGGTTGTC] [+] EMBL BM637387 [CCGGTGGCAAGTGCGAAGAGAACACGCATTTAACTTCCGTTCAATTCTGACAACCGAAACTTGTTGCTTGCTTGCAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAGCAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTAGCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGACGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACTCGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATGGGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGGCCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGTAAGATGAACGTCTAATGTAGGATAATTTAGCTCGATTTGCGTTAGCCATCGTTGTTTGTTGTGTTGTGTATAGACTGAAATAAAATAAACGTACCCAATGTTATTACCAGCAAAAGTAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAACATTTACGTCGGCAATTTGCCATGCTCTCAAGGTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2595#0 GGCAAGAATCGGCACGATGGGTGCAGTCTACTTCCTTGTGCTGTTTGTGGAATCGTAACA 60 consensus_2595#1 --------CCGGTGGCAAGTGCGAAGAGAACACGCATTTAACTTCCGTTCAATTCTGACA 52 *** * * * * ** ** * * * * ** *** * *** consensus_2595#0 AACAACAAAACACACATTTCAAAATGAAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAG 120 consensus_2595#1 ACCG---AAACTTGTTGCTTGCT-TGCAGTTCTTCGTGTTCGTCGCTTCGCTCAGTGCAG 108 * * **** * ** ********************************* consensus_2595#0 CAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTA 180 consensus_2595#1 CAGTGGCTATGTTCGGAGCGCATGGTGCCGTCGTTCCAGTGGCACCGGCCGTAGCCGTTA 168 ************************************************************ consensus_2595#0 GCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGA 240 consensus_2595#1 GCACCAACTACGATCCACTGCCGCAGTACACCTATGCGTACAACGTGCAGGACGCTCTGA 228 ************************************************************ consensus_2595#0 CGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACT 300 consensus_2595#1 CGGGCGATAGCAAAAGCCAGCAAGAGACGCGAGATGGCGACATCGTACGAGGCTCCTACT 288 ************************************************************ consensus_2595#0 CGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATG 360 consensus_2595#1 CGCTGGTCGAACCAGACGGCACGCTGCGTACGGTCTTCTACACTGCCGATCCCGTCAATG 348 ************************************************************ consensus_2595#0 GGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGG 420 consensus_2595#1 GGTTCAATGCCGTCGTACAGCGTGGCCCGCTCGTACCGAAGGCAGTCGTGCCGGTAGCGG 408 ************************************************************ consensus_2595#0 CCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGT 480 consensus_2595#1 CCGGTCCGGCCATCCTTGCACCGGCTCCCGTGGCCCGAGTGTTAGGCTAAGCGTTCCAGT 468 ************************************************************ consensus_2595#0 AAGATGAACGTCTAATGTAGGATAAGTTTAGCTCGATTTGCGTTAGCCATCGTTGTTATG 540 consensus_2595#1 AAGATGAACGTCTAATGTAGGATAA-TTTAGCTCGATTTGCGTTAGCCATCGTTGTT-TG 526 ************************* ******************************* ** consensus_2595#0 TTGTAGTTGTGTATAGACTGAAATAAAGATAAACGTACCCAATGTTATTACCAGCAAAAG 600 consensus_2595#1 TTGT-GTTGTGTATAGACTGAAATAAA-ATAAACGTACCCAATGTTATTACCAGCAAAAG 584 **** ********************** ******************************** consensus_2595#0 TAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAAAAAACACAAACAAAAACAAACAAC 660 consensus_2595#1 TAGCCATGCAGAATGGTATGTTGGTTTATCTCTAAACATTTACGT-CGGCAATTTGCCAT 643 ************************************ * ** * ** * * consensus_2595#0 AAAAACA-------- 667 consensus_2595#1 GCTCTCAAGGTTGTC 658 ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||