These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAATAAAATACTAAAATTGACAAGTGC] [+] EMBL BM637488 [CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAATAAAATACTAAAATTGACAAGTGC] consensusID : consensus_2606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC] [+] EMBL BM639763 [GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2606#0 --CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGT 58 consensus_2606#1 GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGT 60 ** * * * ** * * ******************************** consensus_2606#0 TATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATA 118 consensus_2606#1 TATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATA 120 ************************************************************ consensus_2606#0 ACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTG 178 consensus_2606#1 ACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTG 180 ********************* ************** *********************** consensus_2606#0 CGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGT 238 consensus_2606#1 CGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGT---TTGTTGTTGTTGT 237 ******************************************** ************* consensus_2606#0 TGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCG 298 consensus_2606#1 TGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTG-CCCCTCCG 296 *************************************************** ******** consensus_2606#0 TCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTG 358 consensus_2606#1 TCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTG 356 ************************************************************ consensus_2606#0 TTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTA 418 consensus_2606#1 TTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTA 416 ************************************************************ consensus_2606#0 ACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATC 478 consensus_2606#1 ACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATC 476 ***************************** ************ ***************** consensus_2606#0 GTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGC 538 consensus_2606#1 GTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGC 536 ************************************************************ consensus_2606#0 AACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAAT 598 consensus_2606#1 AACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC--------------------- 575 **** ************** ****************** consensus_2606#0 AAAATACTAAAATTGACAAGTGC 621 consensus_2606#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||